Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04400 ATGTCTTTTCATTGGTTTTATTTTACATGGCTATTTCTGATGATTGGTTCCAGAATAGAGCTATCAAATGCTCAAATTCATAAAAGATATGGAAATAGGTTATATCCTTATAAAACAATATGTGTTGATCCAAAGAGGAGAGGATGTTTTTCTACTATACAATCTGCCATTGATTCTGTACCTACAAACAATAGGTATTGGACTTCGATTAATATCAAAGCCGGTTACTACAGGGAGAAGTTGACGATTCCATATGATAAGCCTTATATCATTATTAGAGGAGATGGATTGAGCAATACTTTGGTTGAATGGGATGACCATTCAAGCACTATGCAGAGCCCTACCTTTCTTACCATGGCTGACAATACTGTAGTCAAGTATATCACTTTTAAGAATTCATACAATGATCCTAGAAAACGTAATCCATGGTTACCAGCCGTAGCTGCAATGGTAAGTGGTGACATGTCATACTTCTATGGCGTTGGCTTCTTAGGTTTTCAAGACACTTTGTGGGATGAGAATGGAAGACATTACTTCCATAACTGTTTCATCGAAGGTGCTGTTGATTTCATATTTGGTGCAGGCCAGTCTTTATACGAGGGTTGTACGATATCGGTTATTGCGGCTGCATTAGGACCAGGAGTACCTGGAATTATAACAGCACAAGGAAGAACAAATCCTAATGATGCAAATGGATTTGTTTTTAAGCATTGTAAGATATATGGAGATGGTACAACATATTTGGGAAGACCATGGAGAGCTTATGCTAGGGTTTTTTTCTACAATAACAATATGTCTAATATTGTTCAACCTCTTGGTTGGGATCCATGGAATTTCGTTGGACACGAGAATCGTATACAATTCTCAGAGTATTTAAATTATGGATCTGGTGCTACCACAAACTATAGAGTGAAATGGACTAAAAATTTGGATATGCAAACTATTAATACAATGGCAAGTCTTAGTTTTATTGATAATGATGGATGGCTTCAAAATCAACCATTCTAA 1008 0.3631 MSFHWFYFTWLFLMIGSRIELSNAQIHKRYGNRLYPYKTICVDPKRRGCFSTIQSAIDSVPTNNRYWTSINIKAGYYREKLTIPYDKPYIIIRGDGLSNTLVEWDDHSSTMQSPTFLTMADNTVVKYITFKNSYNDPRKRNPWLPAVAAMVSGDMSYFYGVGFLGFQDTLWDENGRHYFHNCFIEGAVDFIFGAGQSLYEGCTISVIAAALGPGVPGIITAQGRTNPNDANGFVFKHCKIYGDGTTYLGRPWRAYARVFFYNNNMSNIVQPLGWDPWNFVGHENRIQFSEYLNYGSGATTNYRVKWTKNLDMQTINTMASLSFIDNDGWLQNQPF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04400 335 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Vivi4g04400 335 Gene3D - 36 335 IPR012334 -
Vivi4g04400 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 331 - -
Vivi4g04400 335 FunFam Pectinesterase 35 334 - -
Vivi4g04400 335 Pfam Pectinesterase 42 325 IPR000070 GO:0030599|GO:0042545
Vivi4g04400 335 SUPERFAMILY Pectin lyase-like 36 332 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04400 Vivi-Chr4 170719420 170729235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04400 38 283 Carbohydrate Esterase AT2G19150 46.964 1.24e-76 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04400 - - gmx:100819252 442.195