Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04386 ATGATTCCGAATTTGAACTTGGAAGCTGAAAATAGCTTAGAAGTAAGCAGTCAAGTAGGTTCCAACATTTACTTCCAAGAAACAACATCTTATGATGTTACCAAAGACAGTGCAACAACTTCCTGCCTTACAAATCTTCCAGATTCTGTTTCCCTTAACCTGTCTCTCAGCTTCGATCCGAGCGAAGAAGATTTCAAGGAAACAAGCGACACAAACAGCGAGGTTGTAGGAGCTGATCAGGCTAATAACACCACCGCGTCAGTGCCACCGGTTCATAGAGTTTTCTCATGTAACTATTGTAAGAGGAAGTTCTTTAGCTCACAAGCCTTAGGCGGACATCAGAACGCTCATAAAAGGGAGAGAACGATGGCGAAGCGCGCAATGCGAATGGGAATGTTCTCTCAGAGGTATTCAAGCTTAGCTTCTTTACCTCTTCATGGTTCTTCTTCTTTTCATTCTTTTGGAATTCAATCACATTCTGCAATGCATAATAATCACATGCCATCGTCGTCGTCGTCAATGAGGGCTAGTGAAATTCGAGCTACAGCGAAATTCGAGAATGAGTATTTTGGAGCAGCGCCGATGTTTATGCAGCATAACGATAACGCGGGTGTATTTTGGCCTGGAAGTTTCAGACAGATAGGTCAAAGTGTTGATGCTCATAATTCAAATTTGAATACTGGTTTTGTTGTAGCAACAGAACCTCCTCAACAAACATCTACTGTATCTCCTGATCTCACTCTCAGGCTTTGA 753 0.4236 MIPNLNLEAENSLEVSSQVGSNIYFQETTSYDVTKDSATTSCLTNLPDSVSLNLSLSFDPSEEDFKETSDTNSEVVGADQANNTTASVPPVHRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFSQRYSSLASLPLHGSSSFHSFGIQSHSAMHNNHMPSSSSSMRASEIRATAKFENEYFGAAPMFMQHNDNAGVFWPGSFRQIGQSVDAHNSNLNTGFVVATEPPQQTSTVSPDLTLRL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04386 250 FunFam Zinc finger protein 2 67 141 - -
Vivi4g04386 250 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Vivi4g04386 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Vivi4g04386 250 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 49 193 IPR044246 GO:0009788
Vivi4g04386 250 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Vivi4g04386 250 Gene3D Classic Zinc Finger 69 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04386 Vivi-Chr4 170475378 170477118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04386 93 250 C2H2 Transcription Factor Family AT1G66140 46.154 5.64e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g04386 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04386 - - psat:127096958 405.986