Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04380 ATGGATGATGAGAACATGGAAGAGGCAATTAACATGGATGAATTTAGTAACGCCATCACATCCCTTTGGTGGGATGCCGAAAACTGCAGACTTCCCCGTGACGCTAAAGCAAGCAATATAGTGCCTAATATTGCTTCAAATCTGGCTGATATCGGCTTAACTGGGCCACTATCTATGTATATTTATGGCAACATTCTTCCACACGTTGATCGTAATGGCAATCATAAAGGCTTTACGAGTAAACAACATGTGGATCTCTTCGCCTCCTCGTGTGTTTCTTTCCAACATGTTCCTGGGGATAATAATAAAGCAGATTCTACTGATAAGAGAATGATACTTGGCATGATGAATTGGGGATACCACCACTCTCCACCTGCCAATTATGTTATAATATCCGGAGACGGTGATTTTTCTTATACGGTTCATAATCTTAGAATGATGAAATACAAGGTACTTCTTATTCAACCAAAGGTAGCTGTGGATACTTTAGTAGCGTCTACGCAGACGGTTTAG 513 0.4074 MDDENMEEAINMDEFSNAITSLWWDAENCRLPRDAKASNIVPNIASNLADIGLTGPLSMYIYGNILPHVDRNGNHKGFTSKQHVDLFASSCVSFQHVPGDNNKADSTDKRMILGMMNWGYHHSPPANYVIISGDGDFSYTVHNLRMMKYKVLLIQPKVAVDTLVASTQTV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04380 170 CDD PIN_limkain_b1_N_like 20 156 - -
Vivi4g04380 170 Gene3D - 16 168 - -
Vivi4g04380 170 Pfam NYN domain 20 165 IPR021139 GO:0004540
Vivi4g04380 170 PANTHER LIMKAIN B LKAP 15 165 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04380 Vivi-Chr4 170422724 170423519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04380 14 170 C2H2 Transcription Factor Family AT5G61190 35.849 3.51e-28 107