Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi4g04380 | ATGGATGATGAGAACATGGAAGAGGCAATTAACATGGATGAATTTAGTAACGCCATCACATCCCTTTGGTGGGATGCCGAAAACTGCAGACTTCCCCGTGACGCTAAAGCAAGCAATATAGTGCCTAATATTGCTTCAAATCTGGCTGATATCGGCTTAACTGGGCCACTATCTATGTATATTTATGGCAACATTCTTCCACACGTTGATCGTAATGGCAATCATAAAGGCTTTACGAGTAAACAACATGTGGATCTCTTCGCCTCCTCGTGTGTTTCTTTCCAACATGTTCCTGGGGATAATAATAAAGCAGATTCTACTGATAAGAGAATGATACTTGGCATGATGAATTGGGGATACCACCACTCTCCACCTGCCAATTATGTTATAATATCCGGAGACGGTGATTTTTCTTATACGGTTCATAATCTTAGAATGATGAAATACAAGGTACTTCTTATTCAACCAAAGGTAGCTGTGGATACTTTAGTAGCGTCTACGCAGACGGTTTAG | 513 | 0.4074 | MDDENMEEAINMDEFSNAITSLWWDAENCRLPRDAKASNIVPNIASNLADIGLTGPLSMYIYGNILPHVDRNGNHKGFTSKQHVDLFASSCVSFQHVPGDNNKADSTDKRMILGMMNWGYHHSPPANYVIISGDGDFSYTVHNLRMMKYKVLLIQPKVAVDTLVASTQTV | 170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi4g04380 | 170 | CDD | PIN_limkain_b1_N_like | 20 | 156 | - | - | |
| Vivi4g04380 | 170 | Gene3D | - | 16 | 168 | - | - | |
| Vivi4g04380 | 170 | Pfam | NYN domain | 20 | 165 | IPR021139 | GO:0004540 | |
| Vivi4g04380 | 170 | PANTHER | LIMKAIN B LKAP | 15 | 165 | IPR024768 | GO:0005777|GO:0010468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi4g04380 | Vivi-Chr4 | 170422724 | 170423519 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi4g04380 | 14 | 170 | C2H2 Transcription Factor Family | AT5G61190 | 35.849 | 3.51e-28 | 107 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi4g04380 | - | - | vvo:131598303 | 354.369 |