Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04372 ATGGAAGATTCACAATCTTTTGGAAAAACAATGAAAGAAAAGATCTTGAAACGGAAAAGGGTGAACAAAGCCTTAGAAATTTTTAGGGACTTGTCTCACAAACTCTATTGTGAGTACAAGTCAAGTGAAGTTAAGAACTTGAAAGCAAAAACAAAAGCTTTGCTAGAAGCTGCAATGTTTATGAAAGAGAAACATCAATGGGAAAACAGTGGAAAAAGATTAGGGCATGTAGATGGAATTGAAGTTGGTGACCACTTTCAATACAGGAATGAACTGGTTGTCATTGGTCTGCATCAACAATTCTGCAGTGGTATTGATTATTTGGGTAAAGGCGAGTTTTCTTTCGCAACTAGTATTGTTGTGAGTGATAAGTATGCAAATGTTATGAAGTCTGGTGGTTGCTTGGTTTATGAAGGTCAAGGTAGTAATCCTAATGTGAAGACAACGGCCGCGCCTCCGCGTGATCAGAAATTGGAAGGGGGGAATCTTGCTTTGAGGAATAGTATGAATGGTAGGAGGCCGGTTAGGGTTATATTGAAGGTTTTTGGGAAGTTTAATGGGAGGGAAGAATGGAAGAACACTGTTTCGGATTATTCGTATGTATATGATGGGCTGTATTTGGTTGATAGGATGACTCAAGAAAGGGGACAATTTGGAAAACTTGTGTTCAAGTTTGTTCTTAACAAAATTTCTGATCAATCCGCGGGTGTTTCCTCTCGAGATGTTGTTAAGAACCAACCCGCGAGTGTTTCCTCTCGGGATGTTGTTAAGGAAACGGAAACTTTCTTGAAGAGACGGAGGACTAAAGGTTGTGGTCTCGACAAGGATGTCATTCGAATCAATGATATTTCGGAGGGGAAAGAAAAGTTTCCAATTCGAGTGGTGACGCCAATAAGTTGTGTGGAGAAGCCTAAACCCTTTGGCTACCTAGTCAAAATGAGTTATCCAAAGATGAATCATTCAACACTACTAGGTGGTGGATGTAATTGTGAAAATGCATGTGTTGATTCTCTTGATTGTGTTTGCATAGCTAAGAATAATGGTGGGACACTAGCATATGGTGGTAACAAGAGACTAGTTTCTCCTATCAAACCGTCTTTTATATACGAATGTGGCCCTTCTTGCGCGTGTTCATCGACTTGCATGAACCGAGTGAGTCAATGCGGGATTCAGTTCCAACTAGAAATCTTCAAAACAAATTCAAAGGGGTGGGGTGTTAGAACGCGATCTTTCATTCCATCGGGAAGCTTTGTGTGTGAGCTCATCGGAGAACTTGTTCATCAAAACAACGGAAAATCAGGATCAAATCTACATGTCGATGACTACATATTCAATATTGGTGGTGGCTTCATTGATGCAACTAGACATGGAAACATTGGAAGGTTTATAAATCATAGTTGCTGTCCTAACCTATGTATGAAAGATGTTATGTATGATCACAATGATAAGAGTCTTCCACACAAAATGTTGTTTGCTTTAAAGGACATAGCTCCGGGTAGAGAGGTAAGTTATGATTACAATTGCTGCAAGGGTAGTATCAAGGGATGGAGTAATATTTGCTGCTGTGGTTCATCAGAATGCAAAGGATATATTTACAATTGA 1602 0.3964 MEDSQSFGKTMKEKILKRKRVNKALEIFRDLSHKLYCEYKSSEVKNLKAKTKALLEAAMFMKEKHQWENSGKRLGHVDGIEVGDHFQYRNELVVIGLHQQFCSGIDYLGKGEFSFATSIVVSDKYANVMKSGGCLVYEGQGSNPNVKTTAAPPRDQKLEGGNLALRNSMNGRRPVRVILKVFGKFNGREEWKNTVSDYSYVYDGLYLVDRMTQERGQFGKLVFKFVLNKISDQSAGVSSRDVVKNQPASVSSRDVVKETETFLKRRRTKGCGLDKDVIRINDISEGKEKFPIRVVTPISCVEKPKPFGYLVKMSYPKMNHSTLLGGGCNCENACVDSLDCVCIAKNNGGTLAYGGNKRLVSPIKPSFIYECGPSCACSSTCMNRVSQCGIQFQLEIFKTNSKGWGVRTRSFIPSGSFVCELIGELVHQNNGKSGSNLHVDDYIFNIGGGFIDATRHGNIGRFINHSCCPNLCMKDVMYDHNDKSLPHKMLFALKDIAPGREVSYDYNCCKGSIKGWSNICCCGSSECKGYIYN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04372 533 SMART G9a_1 70 233 IPR003105 -
Vivi4g04372 533 Pfam SET domain 403 507 IPR001214 GO:0005515
Vivi4g04372 533 ProSiteProfiles Pre-SET domain profile. 326 389 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g04372 533 SUPERFAMILY PUA domain-like 57 242 IPR015947 -
Vivi4g04372 533 Gene3D SET domain 273 532 IPR046341 -
Vivi4g04372 533 Pfam SAD/SRA domain 74 233 IPR003105 -
Vivi4g04372 533 SMART preset_2 280 376 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g04372 533 Pfam Pre-SET motif 283 384 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g04372 533 SUPERFAMILY SET domain 277 522 IPR046341 -
Vivi4g04372 533 ProSiteProfiles SET domain profile. 392 507 IPR001214 GO:0005515
Vivi4g04372 533 Gene3D - 56 251 IPR036987 -
Vivi4g04372 533 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 13 526 - -
Vivi4g04372 533 ProSiteProfiles Post-SET domain profile. 520 532 IPR003616 -
Vivi4g04372 533 SMART set_7 392 513 IPR001214 GO:0005515
Vivi4g04372 533 ProSiteProfiles YDG domain profile. 75 229 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04372 Vivi-Chr4 170307093 170309415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04372 69 529 Su(var)3-9 homologs AT1G73100 33.400 5.13e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g04372 SAD_SRA 2.9e-39 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04372 - K11420 gmx:100807574 567.385