Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04358 ATGGATGAAAATAGTGAAAGACGTGTGATGTTGTTTGGTGTGAACATCGCAGCAAAACGTTCTACAACTAATTACACCATGAACGACAGTTCCAACACTGAGGATGAGAAACACAGTGAGATGGAGCTTTGTTCGTTGGACAAGCAAGAGGATGATGGGGAGGATGATAGTGATGATGAGAGGAATGAAAATACGGATTCTAGTCAGAGTTCCAACCCTGAAAACCGAAAAAAAGTGAAACAATGGACCAAGGATGAACACAAGGCGTTTTTGGTAGGTTTACAAACGATGGGGAAAGGTAAATGGAAGGATATATCAAGGAACTATGTGAAGACCAAGACTTCTACTCAAGTTGCCAGTCATGCTCAAAAGTTTTTTCTCAGAAAAAAAACATTTGAAAAAACTAAACGCGAGAGCGTTTTCGATATGATGCTTGATTCTGAAGATTCAGAAACTCGGACTTCTTCTCCTTCGGGGCAACCGTCCCCCGGCAAGTCTATTTAG 504 0.4127 MDENSERRVMLFGVNIAAKRSTTNYTMNDSSNTEDEKHSEMELCSLDKQEDDGEDDSDDERNENTDSSQSSNPENRKKVKQWTKDEHKAFLVGLQTMGKGKWKDISRNYVKTKTSTQVASHAQKFFLRKKTFEKTKRESVFDMMLDSEDSETRTSSPSGQPSPGKSI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04358 167 MobiDBLite consensus disorder prediction 31 46 - -
Vivi4g04358 167 MobiDBLite consensus disorder prediction 47 62 - -
Vivi4g04358 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Vivi4g04358 167 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Vivi4g04358 167 Pfam Myb-like DNA-binding domain 80 124 IPR001005 -
Vivi4g04358 167 MobiDBLite consensus disorder prediction 18 84 - -
Vivi4g04358 167 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 129 IPR006447 GO:0003677
Vivi4g04358 167 PANTHER TRANSCRIPTION FACTOR KUA1 6 153 - -
Vivi4g04358 167 SUPERFAMILY Homeodomain-like 76 130 IPR009057 -
Vivi4g04358 167 MobiDBLite consensus disorder prediction 150 167 - -
Vivi4g04358 167 FunFam transcription factor MYB1R1 80 131 - -
Vivi4g04358 167 MobiDBLite consensus disorder prediction 145 167 - -
Vivi4g04358 167 Gene3D - 80 132 - -
Vivi4g04358 167 CDD SANT 82 126 IPR001005 -
Vivi4g04358 167 SMART sant 78 128 IPR001005 -
Vivi4g04358 167 ProSiteProfiles SANT domain profile. 80 130 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04358 Vivi-Chr4 170241472 170242188 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi4g04358 Myb_DNA-binding 1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04358 - - psat:127093981 223.016