LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g04357	ATGGAACAAACATTTGAGTCCACCTTCAGTTTCTGGTCCTCAAACATTCTAGAAACTCAAAATTCCAATAACATGACACAAACACCTTTCTCTAAGCCTCCAAGATCATCCTCCAATCTAAGCAACCGTAAACCCTCTTTGATGAACATCAAAATCCCTTCCATTACCAAACCTATCCCACAACAAAACATTCAAGAGGATAATAAGCACTATAGAGGTGTTAGAAGAAGACCATGGGGGAAATTTGCTGCTGAAATCCGTGACCCTAATAGAAAAGGGTCAAGAGTGTGGCTTGGAACGTTTGACACAGCCATAGAAGCTGCAAGAGCTTATGATAAAGCTGCTTTTCAGATGAGAGGAAGTAAGGCCATATTGAACTTTCCTCTAGATGTTGCAATTGCAACTGATGAATCTGCACAAGAATCACTTTCTAGCTCAAAATACATGAAAGTTGGTGAGAAAAGAGAAAGAGATGAAGGAAATTATGTTAAAATTGAGATGAATAATAGTAATAAGCAAGTGAAGAAAGAAGAAGTGGTTTCAGTTTCAGTTTCAGGTACAGGAGGAACAGTTTGTCCTTTGACTCCTTCATGTTGGAAAGGGTTTTGGGATACTGATGTTAAGGGAACTATCTTCAGTGTACCTCCTTTGTCACCCTTATCTCCACAACTTATGGGATGTTGA	684	0.3904	MEQTFESTFSFWSSNILETQNSNNMTQTPFSKPPRSSSNLSNRKPSLMNIKIPSITKPIPQQNIQEDNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAARAYDKAAFQMRGSKAILNFPLDVAIATDESAQESLSSSKYMKVGEKRERDEGNYVKIEMNNSNKQVKKEEVVSVSVSGTGGTVCPLTPSCWKGFWDTDVKGTIFSVPPLSPLSPQLMGC	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g04357	227	PRINTS	Ethylene responsive element binding protein signature	71	82	IPR001471	GO:0003700\|GO:0006355
	Vivi4g04357	227	PRINTS	Ethylene responsive element binding protein signature	94	110	IPR001471	GO:0003700\|GO:0006355
	Vivi4g04357	227	Pfam	AP2 domain	70	120	IPR001471	GO:0003700\|GO:0006355
	Vivi4g04357	227	Gene3D	AP2/ERF domain	69	131	IPR036955	GO:0003700\|GO:0006355
	Vivi4g04357	227	ProSiteProfiles	AP2/ERF domain profile.	70	128	IPR001471	GO:0003700\|GO:0006355
	Vivi4g04357	227	SMART	rav1_2	70	134	IPR001471	GO:0003700\|GO:0006355
	Vivi4g04357	227	PANTHER	DNA-BINDING DOMAIN	39	167	IPR044808	GO:0003700\|GO:0009873
	Vivi4g04357	227	CDD	AP2	69	128	IPR001471	GO:0003700\|GO:0006355
	Vivi4g04357	227	SUPERFAMILY	DNA-binding domain	70	130	IPR016177	GO:0003677
	Vivi4g04357	227	MobiDBLite	consensus disorder prediction	21	45	-	-
	Vivi4g04357	227	FunFam	Ethylene-responsive transcription factor 2	69	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g04357	Vivi-Chr4	170227858	170229017	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g04357	36	219	AP2-EREBP Transcription Factor Family	AT5G51190	53.684	6.97e-58	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi4g04357		AP2	3.5e-16	CL0081