Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04356 ATGACAACAGCAAAAGAAGCTTCAAACATAGATCTCATACGCCATCATCTCTTAGGTGACACCATCTCTGACCCTTTTCTCCATCCTGTTAAACTTGAAAACCCTTCATCAGATTTTGATTTCTCTTCATATATCTCAGACAACTCCACCTTCTTCACTTTCCTTGAAGACTATGATTTGATATCAGACATGGAGTTCTTTAACCACACTTCATCTTCAAGTGAAACAAGCCCTTCAAAGGAAACCAAAAAATCATCAAATTCATCACCTGAAGTAGTAGTAGTGCCAGTACCAGTACAAAGTACTACTGTGCCATCATCAAAGAAGATGAAGAAAGAAGAAGAGTGTGTTGGTGTTGGTGTTGGTGAGACAAGGAGGTATAGAGGAGTAAGGAGAAGGCCATGGGGGAAATTTGCAGCTGAGATACGTGATCCGTCAAGGAAAGGAAGTAGGGTTTGGTTAGGTACATTTGATAGTGAGATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTTAGAATGAGGGGTAGGAAAGCTATATTGAATTTTCCTTTGGAGGCTGGATTGTGTGATCCTAAGCCAAATAGTTGTGGCAGGAAAAGGAGAAGAGAAAGAGAAAGTGAAAGTGAAGAAGCTACAAGAAGTACTAGTTCAAGTTCATGA 663 0.3997 MTTAKEASNIDLIRHHLLGDTISDPFLHPVKLENPSSDFDFSSYISDNSTFFTFLEDYDLISDMEFFNHTSSSSETSPSKETKKSSNSSPEVVVVPVPVQSTTVPSSKKMKKEEECVGVGVGETRRYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFDSEIDAAKAYDSAAFRMRGRKAILNFPLEAGLCDPKPNSCGRKRRRERESESEEATRSTSSSS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04356 220 MobiDBLite consensus disorder prediction 195 212 - -
Vivi4g04356 220 Pfam AP2 domain 126 176 IPR001471 GO:0003700|GO:0006355
Vivi4g04356 220 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
Vivi4g04356 220 PRINTS Ethylene responsive element binding protein signature 166 186 IPR001471 GO:0003700|GO:0006355
Vivi4g04356 220 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Vivi4g04356 220 FunFam Ethylene-responsive transcription factor 2 125 186 - -
Vivi4g04356 220 PANTHER DNA-BINDING DOMAIN 74 208 IPR044808 GO:0003700|GO:0009873
Vivi4g04356 220 MobiDBLite consensus disorder prediction 192 220 - -
Vivi4g04356 220 MobiDBLite consensus disorder prediction 70 91 - -
Vivi4g04356 220 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Vivi4g04356 220 CDD AP2 134 184 IPR001471 GO:0003700|GO:0006355
Vivi4g04356 220 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Vivi4g04356 220 Gene3D AP2/ERF domain 125 186 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04356 Vivi-Chr4 170214135 170215209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04356 1 203 AP2-EREBP Transcription Factor Family AT5G07580 40.000 1.34e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi4g04356 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04356 - - ccaj:109813158 224.942