Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04337 ATGAACATGACGACGACTCCTCCATTAGATCAGCAGAATCTGGAAGAGGACTCTGAGATGCTGGTTCCTCACTCCGAAGAGGCTGTTGTTGAAGGTCCCCAACCTATGGAAGTGGTCCAACCAGAAAACACAAGTGCAGAAAACACAAGTACAGTGGATGCTATGGCAGTAGAAGATCCGCCATCTGGGAGATTCACTTGGGCTATTGACAATTTTTCAAGGCTTCAGAAGAAACATTATTCTGACGTTTTCAGTGTTGGGGGCTATAAATGGCGGATACTGATCTTTCCGAAGGGGAATAATTCTGAACATCTGTCAATGTATATAGATGTTGCAGATTCATCTTCAATGCCTTATGGTTGGACTAGATTTGCACAGTTCAGCTTATCTGTGGTTAATCAGGTTCACAGTAAATATACCATCAGAAAAGAAACACAACACCAGTTCAATGCACGGGAGAGTGATTGGGGTTTCACTAATTTCATGCCTCTTGCTGAATTGTATGATCCTGGTAGGGGTTATATCGTGGACGACAGATGCATACTTGAGGCTGATGTGAATGTGCGCAAAGATCTTGATTACTGGGCCCATGACTCAAAAAAAGAAACTGGTTGTGTAGGTTTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTTCTTCAGACATTGTATCACATTCCTTATTTCAGAAAGGCTGTGTACCATATGCCCACAACCGAAAATGATATGCCATCTGGGAGCATCCCTCTGGCATTACAGAGTTTGTTTTACAAGTTGCAGTATAATGACAGCAGTGTATCAACAAAAGAGTTAACCAAGTCCTTTGGATGGGATACATATGATTCATTCATGCAGCATGATGTCCAAGAACTTAATAGGGTTCTTTGTGAAAAGCTAGAAGATAAAATGAAGGGAACTGTTGTTGAAGGCACTATACAGCAGTTGTTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGTGGATTATAAATCAACACGAAAAGAATCATTTTATGATCTTCAGCTGGATGTCAAAGGCTGTACTGATGTGTATGCTTCTTTCGATAAGTATGTGGAAGTGGAAAAACTTGAGGGCGATAACAAGTATCACGCAGAGCAGTATGGTTTACAGGAAGCAAAGAAGGGAGTATTGTTCATTGATTTTCCACCGGTTCTTCAGCTTCAGTTAAAACGGTTCGAGTATGATTTTGTGCGAGACACTATGGTTAAGATCAATGACCGCTATGAGTTCCCCTTGCAACTAGATCTTGATAGGGATAATGGAAAATATCTATCTCCTGATGCAGACAGAAGTATCCGCAACCTGTATACACTTCACAGTGTTTTGGTTCACAGTGGTGGAGTTCATGGTGGCCACTACTATGCATATATACGTCCGACTCTTTCAAATCAGTGGTTTAAATTTGACGATGAACGAGTAACAAAAGAAGATACAAACAGAGCTTTAGAAGAGCAGTATGGTGGTGAAGAAGAGTTACCTCATACAAATCCTGGGTTCAACAACTCTCCTTTTAAATTTACAAAGTACTCAAATGCATATATGCTTGTCTATGTACGTGAAAGTGACAAGGATAAGATAATTTGTAATGTGGATGAAAAGGATATTGCCAAACACCTTCAAATAAGATTAAAGAAAGAACAAGAGGAAAAGGAGAAGAAGAAGAAGGAGAAGGCTGAGGCTCATTTGTATACCATCGTAAAGATTGCCCGTGATGATGATCTGCATGATCAAATTGGAAAGGATATGTTCTTTGATCTTGTGGATCATGATAAAGTGCGAAGTTTTCGCATCCAAAAACAGACGCCCTTTGTAATTTTCAAGGAAGAAGTTGCAAAAGAGTTTGGCATACCAGTTGAGCACCAACGCTTTTGGCTGTGGGCAAAACGTCAAAACCATACTTATCGGCCAAGTAGGCCAGTGGCAGCTCAGGAAGAAACACAGTCAGTTGGTCAGTTAAGAGAAGCTTCCAATAAGGCAAATAATGCAGAGTTGAAGCTATTTTTGGAAATAGAAAAGGGGCAGGATTTGCGCCCTATTCCTCCTCCTGAGAAGTTGAAAGAGGAGTTGTTGCTATTCTTTAAACTTTATGAACCTTCAAATGAGAAGCTTCGGTATGTTGGGAGGCTTTTTGTGATGGCTAGCAGAAAGCCAGCAGATATATTGACGAAGCTAAATGAAATGGCTGGATTTGCTCCGGATCAAGAAATTGATCTGTACGAGGAAATAAAATTTGAACCTAAAATCATGTGTGAACTTGTTGACAAGAAGGGCACTTTTCGTGATAATCAGCTAGAGGATGGTGATATTATTTGCTTCCAGAAAAGCCTTCAAGCTGGCGAGGAACAGCAATATTGCTATCCGGATGTTTATTCATTCTTTGATTATGTGCAAAACCGTCAAGTTGTTCGCTTTAGATTTTTGGAGAAACCTAAGGAGGATGAGTTCAGTCTTGAGCTGTCCAAGCTTCACACTTATGATGATGTTGTAGAAAGGGTCTCTCAACATCTTGGTTTGAATGATCCTTCTAAAATCAGACTCACATCTCATAATTGCTACTCCCAGCAACCTAAACCACAGCCTATCAAGTACCGAGGAGTGGATCATTTGTCTGACATGCTGGTTCACTACAATCAGGCTACTGATGTTCTATACTATGAAGTATTGGATATCCCTCTGCCTGAATTGCAATGTCTAAAAACGCTCAAGATTGCTTTCCATCATGATGCCAAGGATGAAGTGATGATAATTAGATTACCGAAGCATAGTACTGTGGCAGATGTAATTAATGATCTAAAATCAAAGGTAGATTTATCACACCCTGATGCCGAACTTAGATTGCTTGAAGTATTCAATCACAAGATCTATAAGATTTTCCATGTCAATGAAAATATTGAGAATATTAATGATCATTATTGGACATTACGAGCAGAAGAGATTCCGGAAGACGAGAAAAACCTTGGCCCTCATGATCGAATGATACATGTTTATCATTTTTTGAAAGACACTGCTCAAAATCAGATGCATGTTCAGAACTTTGGAGATCCGTTCTTCTTGGTTATCCGTGAGGGTGAGACATTAGCTGAAGTCAAATTGCGGGTACAAAAGAAGTTACAAGTTCCAAATGAAGAGTTTTTAAAGTGGAAGTTTGCGTTTGTTTCACTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTATTTCTAGTCGGTTTCAGAGAAGGGACATATACGGCGCATGGGAGCAATATCTTGGACTGGAGCACACAGACAATTCTCCAAGAAGATCATATACAGCCAATCAGAATCGTCATGCGTTTGATAAACCAATAAAAATCTACAACTAG 3372 0.398 MNMTTTPPLDQQNLEEDSEMLVPHSEEAVVEGPQPMEVVQPENTSAENTSTVDAMAVEDPPSGRFTWAIDNFSRLQKKHYSDVFSVGGYKWRILIFPKGNNSEHLSMYIDVADSSSMPYGWTRFAQFSLSVVNQVHSKYTIRKETQHQFNARESDWGFTNFMPLAELYDPGRGYIVDDRCILEADVNVRKDLDYWAHDSKKETGCVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYNDSSVSTKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCTDVYASFDKYVEVEKLEGDNKYHAEQYGLQEAKKGVLFIDFPPVLQLQLKRFEYDFVRDTMVKINDRYEFPLQLDLDRDNGKYLSPDADRSIRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSNQWFKFDDERVTKEDTNRALEEQYGGEEELPHTNPGFNNSPFKFTKYSNAYMLVYVRESDKDKIICNVDEKDIAKHLQIRLKKEQEEKEKKKKEKAEAHLYTIVKIARDDDLHDQIGKDMFFDLVDHDKVRSFRIQKQTPFVIFKEEVAKEFGIPVEHQRFWLWAKRQNHTYRPSRPVAAQEETQSVGQLREASNKANNAELKLFLEIEKGQDLRPIPPPEKLKEELLLFFKLYEPSNEKLRYVGRLFVMASRKPADILTKLNEMAGFAPDQEIDLYEEIKFEPKIMCELVDKKGTFRDNQLEDGDIICFQKSLQAGEEQQYCYPDVYSFFDYVQNRQVVRFRFLEKPKEDEFSLELSKLHTYDDVVERVSQHLGLNDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQATDVLYYEVLDIPLPELQCLKTLKIAFHHDAKDEVMIIRLPKHSTVADVINDLKSKVDLSHPDAELRLLEVFNHKIYKIFHVNENIENINDHYWTLRAEEIPEDEKNLGPHDRMIHVYHFLKDTAQNQMHVQNFGDPFFLVIREGETLAEVKLRVQKKLQVPNEEFLKWKFAFVSLGRPEYLQDSDIISSRFQRRDIYGAWEQYLGLEHTDNSPRRSYTANQNRHAFDKPIKIYN 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04337 1123 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 207 222 IPR018200 GO:0004843|GO:0006511
Vivi4g04337 1123 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 47 533 - -
Vivi4g04337 1123 Gene3D Cysteine proteinases 202 531 - -
Vivi4g04337 1123 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 206 530 IPR028889 -
Vivi4g04337 1123 Pfam Ubiquitin-specific protease C-terminal 893 1102 IPR029346 -
Vivi4g04337 1123 SUPERFAMILY TRAF domain-like 60 193 - -
Vivi4g04337 1123 SMART math_3 64 167 IPR002083 GO:0005515
Vivi4g04337 1123 CDD peptidase_C19C 204 532 - -
Vivi4g04337 1123 Pfam Ubiquitin carboxyl-terminal hydrolase 206 527 IPR001394 GO:0004843|GO:0016579
Vivi4g04337 1123 ProSiteProfiles MATH/TRAF domain profile. 62 186 IPR002083 GO:0005515
Vivi4g04337 1123 Gene3D - 809 906 - -
Vivi4g04337 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 809 906 - -
Vivi4g04337 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 203 531 - -
Vivi4g04337 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 691 808 - -
Vivi4g04337 1123 Coils Coil 546 571 - -
Vivi4g04337 1123 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 446 463 IPR018200 GO:0004843|GO:0006511
Vivi4g04337 1123 FunFam Ubiquitin carboxyl-terminal hydrolase 13 60 202 - -
Vivi4g04337 1123 CDD MATH 63 186 IPR002083 GO:0005515
Vivi4g04337 1123 Gene3D - 691 808 - -
Vivi4g04337 1123 Pfam MATH domain 69 188 IPR002083 GO:0005515
Vivi4g04337 1123 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g04337 1123 SUPERFAMILY Cysteine proteinases 201 558 IPR038765 -
Vivi4g04337 1123 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 61 201 IPR008974 GO:0005515
Vivi4g04337 1123 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 631 883 IPR024729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04337 Vivi-Chr4 170065841 170091591 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04337 4 170065841 170091591 Vivi4g04337 4 170065841 170091591 ECH
Vivi4g04337 4 170065841 170091591 Vivi5g05428 5 157284557 157292427 ECH