LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g04333	ATGAACAAAATAGGATTAAAACTAAGGTGTTTTGTTCTGACTTCTGAGCTTTCTACCACAACCATGTTCATATTTTTATTTCTCTTTACCTTGCTAATCAAAACTCTAACAGCTACAACAAGCACTGTAAATAGTCCAACCACATTCTCCTTTATTTCTTTTAGTCCCGAAAGCTGCAACAATGGTGAATTGCTTTGTATGGGTTCATCTACTTCTGGAAATGGTTATATAAGTCTCACACCAGAGCCAGTGACACAACAAAGCAACAGTTCAGGTTCTATGTTTGTGACATCTGACGTAGCTAACAAAGTAGGAAGGGTTTTGTACCCTCATCCAGTTCATGTTTGGCCGGCAATTATCACGACTACTTTCACTCTTAGGATCACGCCGTTCTTGAAAAACTCGACCAGCTCGGGTGATGGAATTGCACTAGTATTTGCACAAGATAATAGGCCTTCTCCAAATGATAGCTATGGCTCATATCTTGGCATGTTTGATAGGTCTGCACAAGGTGAGAGTTTTCGACAAATAGGTGTTGAGTTAGACACATTCATGAATGAATTTGATCCAGATGGAAACCATATTGGCATAGTCACAACAAGCATCACAAATCCAATTGCTTTTAGTAGTCTCAATAGCACTAATGTTGATCTTAAAAGTGGAAGAAACATAATGGTTAAAGTTGATTATAATGGCTGGACTAAAATGATTTCGGTCTCGATTGGATACTCAAATAGCCAATTAAAGAGTGTTCTCAACCATTCAATTAACTTGCCTGATATAATTCCAAGCTCAGTTTATGTTGGTTTTACGGCCTCAACCGGCAAGACTTTTCCTGAAACTCATCAAATCCTGAATTGGTTTTTCACATCAGTGCCATTGCCTGCTCTTTCTGTTAAACACAGTGCTATTGGAAAAATCAAGTTCGTGTTCATAATTGTGTTACCAGTTCTTGTGTTAGTTAGTTTACTTTCTGTTATTTGGGAAGCTTGGAAAAAAAGATATAAGAAGGGTGATTGGAATGAAGACATCGAAAGCCTATCAAGGACGGCTGCAGATGCGCCTAAGATGTTCGGTTACAAGGTACTGTCAAAAGCTACTTGTAAGTTCAGCAAAGAAAATCTTGTGGGAAGAGGTGGGTTTGGAAGTGTTTATAAAGGGTTCATGGTGGAAAATGGAAAAACCATAGCAGTAAAGAAAATTTCAGCAACCTCTAAGCAAGGTGAAAGAGAGTTCTTAGCCGAAATATGCACCATCGGCCGTCTTCGACACAAAAACTTAGTCCAACTCCAAGGCTGGTGCAATGAAGGCAAAAATCTTCTCTTAGTTTACGATTACATGCAAAACGGAAGCCTTGATCACTTCATAGGCAAGGACATTCTAGACTGGCAAACAAGGCACAAGATATTAACAGGATTAGCATCAGCATTACTCTACCTTCATGAAGAATGCGGAAATCCAGTAGTTCACAGAGATGTTAAACCTAATAACGTAATGATTGATTCTAATTACAACGCTCATTTAGGCGATTTCGGACTCGCAAGGTTACTAAAAAACGAAGACTCAGTGACTACAAATTTAGCAGGAACACCAGGCTATTTAGCACCTGAAATAGGCTTCACAGGAAAAGCTACACCTGAATCAGATGTTTATAGTTTTGGTATGGTTATACTTGAAGTCATTTGCGGGAAAAGGTCGAAAAGGGTAATGGAAGATAATAGTTTGGTGGATTATGTATGGAATTTACACGCTCAGAATCAAATTCTTGAGTGTGTTGATCAACAGCTGAAAAATTGTTTTGATGTGGAAGAAGCTAAAAGAGGTTTGATGGTTGGATTGGCATGTTTGCATCCGGATTCATTGTTTAGGCCAAAGATGAGGAAAGTTATGCATATTTTTTTGAATCCAAATGAACCTTTGATGGAGTTACCTGAAGTGAGACCTACTGGAGTTTATGTATCGGTTTCTTGTACATCAATCACAGATTTTGTGTCTAGAACTGATCAGTTAGAGCTTCAATCATCCACAACATCTATGGAAAATATGTCTACTTGTATAGAGTATGATGATCAATAG	2076	0.3825	MNKIGLKLRCFVLTSELSTTTMFIFLFLFTLLIKTLTATTSTVNSPTTFSFISFSPESCNNGELLCMGSSTSGNGYISLTPEPVTQQSNSSGSMFVTSDVANKVGRVLYPHPVHVWPAIITTTFTLRITPFLKNSTSSGDGIALVFAQDNRPSPNDSYGSYLGMFDRSAQGESFRQIGVELDTFMNEFDPDGNHIGIVTTSITNPIAFSSLNSTNVDLKSGRNIMVKVDYNGWTKMISVSIGYSNSQLKSVLNHSINLPDIIPSSVYVGFTASTGKTFPETHQILNWFFTSVPLPALSVKHSAIGKIKFVFIIVLPVLVLVSLLSVIWEAWKKRYKKGDWNEDIESLSRTAADAPKMFGYKVLSKATCKFSKENLVGRGGFGSVYKGFMVENGKTIAVKKISATSKQGEREFLAEICTIGRLRHKNLVQLQGWCNEGKNLLLVYDYMQNGSLDHFIGKDILDWQTRHKILTGLASALLYLHEECGNPVVHRDVKPNNVMIDSNYNAHLGDFGLARLLKNEDSVTTNLAGTPGYLAPEIGFTGKATPESDVYSFGMVILEVICGKRSKRVMEDNSLVDYVWNLHAQNQILECVDQQLKNCFDVEEAKRGLMVGLACLHPDSLFRPKMRKVMHIFLNPNEPLMELPEVRPTGVYVSVSCTSITDFVSRTDQLELQSSTTSMENMSTCIEYDDQ	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g04333	691	Gene3D	Phosphorylase Kinase; domain 1	332	446	-	-
	Vivi4g04333	691	ProSitePatterns	Protein kinases ATP-binding region signature.	376	400	IPR017441	GO:0005524
	Vivi4g04333	691	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	488	500	IPR008271	GO:0004672\|GO:0006468
	Vivi4g04333	691	ProSitePatterns	Legume lectins beta-chain signature.	177	183	IPR019825	-
	Vivi4g04333	691	Gene3D	Transferase(Phosphotransferase) domain 1	447	639	-	-
	Vivi4g04333	691	PANTHER	-	88	635	-	-
	Vivi4g04333	691	SUPERFAMILY	Concanavalin A-like lectins/glucanases	51	292	IPR013320	-
	Vivi4g04333	691	SMART	serkin_6	370	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g04333	691	FunFam	probable L-type lectin-domain containing receptor kinase S.5	447	641	-	-
	Vivi4g04333	691	ProSiteProfiles	Protein kinase domain profile.	370	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g04333	691	FunFam	serine/threonine-protein kinase PBS1-like	337	446	-	-
	Vivi4g04333	691	FunFam	Putative L-type lectin-domain containing receptor kinase S.7	45	302	-	-
	Vivi4g04333	691	Pfam	Legume lectin domain	48	292	IPR001220	GO:0030246
	Vivi4g04333	691	Gene3D	-	46	302	-	-
	Vivi4g04333	691	Pfam	Protein kinase domain	371	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi4g04333	691	CDD	lectin_legume_LecRK_Arcelin_ConA	47	291	IPR001220	GO:0030246
	Vivi4g04333	691	CDD	STKc_IRAK	376	633	-	-
	Vivi4g04333	691	SUPERFAMILY	Protein kinase-like (PK-like)	355	663	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g04333	Vivi-Chr4	170021461	170024325	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g04333	17	669	Receptor kinase-like Gene Family	AT5G55830	37.642	5.61e-121	374

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vivi4g04333		Pkinase	8.3e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g04333	-		-	ccaj:109810929	928.702