Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04328 ATGAAGCGTTATGTTTACATCGATGATGATGAGTCATCTCATGATCTTTACTGTGATAATCGAATATCAAATAGAAAATATACTTTATTGAACTTTCTTCCAAAAAATTTATGGGAACAATTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCTTGCAGTTATGGCCTCTCATTACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTTATTTTTGCAGTCTCTGCATCAAAAGAGGCATGGGATGATTACAATAGATATCTTTCAGACAAAAAGGCAAATCAGAAGGAAGTATGGGTTGTTAGGAAAGGTGTCAAGAAACTTATTCAAGCCCAGGATATTCATGTAGGTAATATAATATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGCACGTCTGATCCCCAAGGAGTTTGCTATATAGAGACTTCTGCACTGGATGGTGAAACTGATTTGAAGACGCGGGTCATACCTTCTGCTTGCATGGGAATTGATGTTGAACTATTACACAAAATTAAGGGTGTAATTGAGTGTCCCAGTCCAGATAAAGACGTCATGAGATTTGATGCAAACGTGCGTTTGTACCCCCCTTTTATTGATAATGATGTATGCCCTTTAACCATTAAAAACACAATTCTTCAGTCATGTTACTTGAGAAATACTGAGTGGGCATGTGGAGTTGCTATCTATACAGGAAACGAAACCAAATTGGGCATGAGTAGGGGTATCCCAGAACCAAAGCTCACTGCTATGGATGCCATGATCGACAAGTTGACTGGTGCTATATTTATATTCCAAATTGTTGTTGTATTGGTTCTTGGCATAGCGGGTAATGTTTGGAAGGACACAGAAGCAAGAAAACAATGGTATGTTCTTTACCCTCACGAAGGCCCTTGGTATGAGTTATTGGTAATCCCTTTGCGGTTCGAGCTTCTTTGTTCTATCATGATACCCATTTCAATTAAGGTATCTCTGGATTTAATGAAGAGCTTGTATGCAAAGTTTATTGACTGGGACCATCAAATGATTGACCTAGAGACTAGCATTCCATCTCATGCAACAAATACAGCGATAAGCGAGGACCTTGGACAAGTAGAGTACATTTTGACAGACAAAACAGGCACCCTGACTGAAAATAAGATGATATTTAGAAGATGTTGTATTAGTGGCATTTTCTATGGAAATGAGAGTGGAGATGCATTGAAAGATGTAGAGCTTCTTAATGCTATTTCCAGTGGTTCTTCTGATGCTGTACTATTTCTTACAATTATGGCAATATGTAATACTGTCATACCTACACGAAGCAAAACTGGAGATATCTTGTATAAGGCACAGTCTCAGGATGAAGATGCTCTTGTTCAAGCTGCTGCTCAGCTGCATATGATTTTCTTCAATAAAAGTGGAAACATTCTTGAAGTCAAGTTCAACACTTCTATACTTCAGTATGAAGTCCTGGAGATCTTAGAGTTCACTTCTGATAGGAAAAGAATGTCAGTAGTGTTGAAAGATTGCCAAAATGAAAAGATCCTTCTCCTGTCAAAAGGAGCAGATGAGGCTATTCTTCCATATGCTCGTGCTGGGCAGCAAACCCGTCACTTCATTGATGCTGTGGAACAATATGCTCACTTGGGATTACGTACACTATGTTTGGCTTGGCGTGAGTTAAAGAAAGATGAATATCAAGATTGGTCTTTGATGTTTAAAGAAGCCAGTAGCGCTTTGGTTGATAGAGAGTGGAGAATAGCTGAGGTCTGCCAAAGAGTAGAACATGACTTGGAAATTCTTGGTGTTACGGCGATAGAAGACCGCTTACAGGATGGAGTTCCTGAAACAATAGAAACACTAAGGAAAGCTGGAATAAATTTTTGGATGCTAACAGGAGACAAACAGAATACTGCAATACAAATTGCACTGTCATGTAATTTCATTTCCCCAGAACCGAAGGGACAGCTTCTACTAATTGATGGAAAAACAGAAGACGAAGTTTGCAGAAGTTTAGAAAGAGTGCTTCGTACAATGCGGATAACTACCTCAGAGCCCAAGGATGTGGCTTTTGTTGTTGATGGATGGGCTCTTGAGATAGCACTTAAACACTACCGCAAAGCTTTCACGGAGCTGGCAGTATTGTCAAGGACTGCTATATGCTGTCGTGTGACACCGTCGCAAAAAGCACAGCTTGTACAGATATTAAAATCATGTGATTATAGAACATTGGCAATTGGCGACGGAGGAAATGATGTAAGGATGATACAACAAGCAGATATTGGTGTGGGCATAAGTGGCAGAGAAGGATTGCAGGCAGCAAGAGCAGCTGATTACAGCATTGGAAAGTTTAGATTCCTAAAGAGATTGATTTTGGTCCATGGCCGGTATTCATACAACCGTACAGCATTTCTCTCGCAATATTCATTCTATAAGTCCTTATTGATATGCTTCATCCAAATCTTGTTGAAAAAGGCGTTATATGGCCTAAAGCAATCACCTCGAGCATGGTTTGGAAGATTCACTAAGGTTATGACATCCTTGGGGTACAAGCAAAGTCAAGGGGATCACACCTTGTTCATCAAACACTCGCCACAAGGGGGAGTAACAGTTTTGTTAGTATATGTGGATGACATTATAATGACTGGAGATGATTGGAAGGAGCAACATATCTTGAGTCATTGTTTGGCTAAGGAGTTTGAAATAAAAGCTCTTGGAAAGCTGAAGTACTTCTTGGGAATCGAGGTGGCACATTCCCGAAAAGGCATTTTTATATCACAACAAAAATACATTGCAGATTTACTCAAAGAGACAGGAAAAACAGCGTGTAAACCAGCGAGCGTTCCTATGGATCCAAATCTTAAATTGGGTAATACAGAAGATGTTGCAGTAGATAAAGAAATGTATCAACGTCTAGTTGGGAGATTAATTTACTTGTCTCACACTAGACCTGATATTGCATATGCTGTAAGTATGGTTAGTCAGTTCATGCACTGTCCTAAAGAGATCCATTTACAAGCAGTTCATAGAATCATGCAGTATCTCAAGGGAACTCCAGGAAGAGGAATTTTGTTCAAAAGAAATGGAAATACAACACTTGAGGCCTACACTGATGCAGACTATGCAGGATCAATTGTTGATAGAAGATCCACTACAGGGTATTGCACCTTTCTTGGAGGAAATCTTGTGACTTGGAGGAGTAAGAAGCAAAATGTAGTAGCACGTTCTAGTGCTGAAGCTGAATTTCGAGCCATGGCACAAGGCATTTGTGAATTACTTTGGCTTAAAATTATTTTAGAAGATTTGAAAATCAAATGGGAAGGACCCATGAAGCTCTACTGTGATAATAAGTCAGCTATCAGTATAGCACATAATCCAGTTCAACATGATCGAACTAAGCATATTGAGGTTGATAGACACTTCATTAAGGAGAAGCTTGACAGTGGGCTGATTTGCACCCCATATGTGTCCTCACATGGGCAACTTGCGGATATTCTCACTAAAGGATTGAGTTGCTCAAATTTTGAACGAATTATATCCAAGCTGGGAATGGAGAATACTTAG 3576 0.3965 MKRYVYIDDDESSHDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANQKEVWVVRKGVKKLIQAQDIHVGNIIWLRENDEVPCDLVLIGTSDPQGVCYIETSALDGETDLKTRVIPSACMGIDVELLHKIKGVIECPSPDKDVMRFDANVRLYPPFIDNDVCPLTIKNTILQSCYLRNTEWACGVAIYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVLVLGIAGNVWKDTEARKQWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLMKSLYAKFIDWDHQMIDLETSIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNESGDALKDVELLNAISSGSSDAVLFLTIMAICNTVIPTRSKTGDILYKAQSQDEDALVQAAAQLHMIFFNKSGNILEVKFNTSILQYEVLEILEFTSDRKRMSVVLKDCQNEKILLLSKGADEAILPYARAGQQTRHFIDAVEQYAHLGLRTLCLAWRELKKDEYQDWSLMFKEASSALVDREWRIAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKTEDEVCRSLERVLRTMRITTSEPKDVAFVVDGWALEIALKHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQILLKKALYGLKQSPRAWFGRFTKVMTSLGYKQSQGDHTLFIKHSPQGGVTVLLVYVDDIIMTGDDWKEQHILSHCLAKEFEIKALGKLKYFLGIEVAHSRKGIFISQQKYIADLLKETGKTACKPASVPMDPNLKLGNTEDVAVDKEMYQRLVGRLIYLSHTRPDIAYAVSMVSQFMHCPKEIHLQAVHRIMQYLKGTPGRGILFKRNGNTTLEAYTDADYAGSIVDRRSTTGYCTFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGICELLWLKIILEDLKIKWEGPMKLYCDNKSAISIAHNPVQHDRTKHIEVDRHFIKEKLDSGLICTPYVSSHGQLADILTKGLSCSNFERIISKLGMENT 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04328 1191 Pfam E1-E2 ATPase 99 292 - -
Vivi4g04328 1191 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 826 IPR032630 -
Vivi4g04328 1191 SFLD p-type atpase 362 801 IPR044492 -
Vivi4g04328 1191 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 826 IPR023298 -
Vivi4g04328 1191 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Vivi4g04328 1191 FunFam Phospholipid-transporting ATPase 449 592 - -
Vivi4g04328 1191 Pfam Cation transport ATPase (P-type) 436 532 - -
Vivi4g04328 1191 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Vivi4g04328 1191 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Vivi4g04328 1191 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Vivi4g04328 1191 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Vivi4g04328 1191 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Vivi4g04328 1191 NCBIfam phospholipid-translocating P-type ATPase 429 826 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vivi4g04328 1191 FunFam Phospholipid-transporting ATPase 75 251 - -
Vivi4g04328 1191 CDD RNase_HI_RT_Ty1 1038 1175 - -
Vivi4g04328 1191 SFLD C1.7: P-type atpase like 362 801 - -
Vivi4g04328 1191 SUPERFAMILY HAD-like 374 805 IPR036412 -
Vivi4g04328 1191 Gene3D - 75 251 - -
Vivi4g04328 1191 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Vivi4g04328 1191 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Vivi4g04328 1191 FunFam Phospholipid-transporting ATPase 602 789 - -
Vivi4g04328 1191 Gene3D - 602 790 IPR023214 -
Vivi4g04328 1191 NCBIfam HAD-IC family P-type ATPase 717 827 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g04328 1191 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 827 954 IPR013103 -
Vivi4g04328 1191 Gene3D - 434 583 IPR023299 GO:0000166
Vivi4g04328 1191 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 7 826 - -
Vivi4g04328 1191 SUPERFAMILY DNA/RNA polymerases 822 1141 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04328 Vivi-Chr4 169920140 169939595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04328 1 827 Primary Pumps ATPases AT5G44240 86.215 0.0 1514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04328 K01530 - gmx:100786505 1586.24