Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04301 ATGGACGACGACATGGACATGATGGACATGGACATTCCGCTCCCCGAAGAACTCGAATTGCTCGAATCAAGCTATCGTATCTACGAACAAGAAGACGATGACCACTACTTCTACAACCCTCCCGAAGACGAACCCGAACTCCAACCCGAACAATCACCACCACAAGATCTCGCTTCTCCTTCTGAACCCCAATCCAACAGCCTCAAGCGTACTCGCTCGAATTCGAATTCGGATTCTCCTGAGGTTGAAAAGAGAGAGAAAGTTAGGGTTAGAGCTGAAGATCCTCCCGCGGACGAGGATTGGCTTCGGTACTCTCCTCCTCCTTCTCCAGTTAGAGCTGAAGAAGTGAGATTCTCCAAGGAAAAGACATTGTCACGATTTGCATCGGAGATTGATGGTGAAGTTATGCCCGTGACTGCACCTAATGGAGATAGGGTTTATACTAAGCTAGATAGGTACTATGGTGAGGATCGAGCTACGAAGCTGAATAGTGGAGCGTTTTCTTCCGATCTTGCTTTAGAACCAATCAGTGTTCTGTTTGAAAGGTTGGAGGAAGAGACTTTTGCTAAGACCTTGGAAGCTAGTTCTGAAACCCAAAGTGTTGTAGATGTTCCTGAAACATTAACGCTCCATGAAAAACTTTGGGTAGATAAATACGCTCCAAAATCGTTTACTGATCTTCTTAGTGACGAGCAGACAAATCGTGAGGTACTATTATGGTTAAAACAATGGGATTCTACTGTGTTTGGATCTGAAATTCGAAGTACATCAGAGGATGTTTTGTCTGCTTTGAAACGGCATTCTACTATTTCCCATAATCAAAAACCTATGGGTTCAGGTTTTCCTAGGACAAAAGGAGGGCACGTATGGAGTAATAACAGGTATACAAATTCTAGAAGCAGGGATGAGAGTGATAATTCAAAGAGTAGTCAGGATACACACAATACTAAGACACGGAATATTGGTGCACCGGAGCAGAAGATTCTTCTGCTATGTGGACCACCAGGCCTAGGAAAAACAACCCTTGCACATGTAGCTGCTAAGCATTGTGGATATCATGTGGTGGAGGTTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGACGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGACGGAAAGGGTGCTGTGGAGGCTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCCGATGCAGGGAAGCAGAGTTTGGATAAGGGACAAACAGAAAAGAAATCATCAAAGAAGGGGCGGAAAATTGCATCCCTGTCAAGACCCGTGATTTGCATATGTAATGATTTATACGCACCTGCCTTAAGATCATTACGTCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGAGTGGTAAACAGACTAAAATATATATGTAACAAGGAGAGGGTGAAAGCCAATGCCATTGCACTCACTGCTTTAGCGGAATATACAGCATGTGATATACGCTCATGCTTGAACACACTCCAGTTTGTCTCCAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCGCAAGTTGTTGGTAAGAAGGACATGTCAAAAAATGTTCTAGATATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCTCATGATAGAAAGGTCTCTGAGTTTGACACCTTGTACTCCCTTATATCATACCGTGGCGATAGTGACCTGATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACCGTCAAATGCCTCGACAGTCTCGAAGTTTATGATCTGTTGCATCAATATATAATGCGCACACAACAAATGCCTCTCCTTGTTCATTTGCCTCCTATAGCAATTATTGTACATCATACAGTAGCTCAAGTTCAGAAGCCAATCATTGAGTGGCCAAAGTCATATCACAGGTATCGAACATCAATGATGGAAAAGATGGACATTTTGAATACCTGGCACTACAAAATCTCGCCACATATTGCAAGGCACTTATCAGCTACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCACCAAGCATAAGACCGGTGGCACTACAACTACTATCAGATAAGGAGAAGAATGACATTGCTCAATTAGTTAGCACAATGGTGTCATATGCTATCACATATGAGAAAATGAAGTCAGATATGCTGCCTAATACCCTGAAGTATGGAGTGAAAGATGAATTGTCTCTGTCTCTTGTTCCTCCTATCAGTAACTTTTTAAACTTTAAGGATTATACTTCAAACCATTACGTACTTTCCTTAGCTATGAAGCAGGTTCTGGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATGTCAAAACCATGGGTTTAGAAAATGGAGGGCATGGAGCTATTGAGGCTCGAAATAACTGTATCCCATCTGCCAATACCAACAATCATGCAGCTATAGTTGATAAGAAAACCATTGAAAGTCAAGCTAATATTTTTGCAACGAAATCAAATGAAGCCAAGACAGTTTCACCAAACTTGAATATCACTAACATGGTAAATTCAACCGAGAAAGTGAAACTGCTAGACATGGGAAATAGGAAAAAACCATCTAGGACTTCCTCAAGTTTCTTCGACAGGTTTATAAAGTCAAATGTTAAGGGTCTCCAAAATGATGATGGATCTCTACAGAAAGAAACCACATCAGCGAAAGACCGAAGCCCTTTACTTTTTAAGTTTAATGAGGGTTTTACAAATGCAGTCAGAAGGCCTGTTCGTATGCGAGAATTTCTGTCCTAG 2874 0.4106 MDDDMDMMDMDIPLPEELELLESSYRIYEQEDDDHYFYNPPEDEPELQPEQSPPQDLASPSEPQSNSLKRTRSNSNSDSPEVEKREKVRVRAEDPPADEDWLRYSPPPSPVRAEEVRFSKEKTLSRFASEIDGEVMPVTAPNGDRVYTKLDRYYGEDRATKLNSGAFSSDLALEPISVLFERLEEETFAKTLEASSETQSVVDVPETLTLHEKLWVDKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSEDVLSALKRHSTISHNQKPMGSGFPRTKGGHVWSNNRYTNSRSRDESDNSKSSQDTHNTKTRNIGAPEQKILLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEALLKMISAERKPDAGKQSLDKGQTEKKSSKKGRKIASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVNRLKYICNKERVKANAIALTALAEYTACDIRSCLNTLQFVSKKKETLNAFDIGSQVVGKKDMSKNVLDIWKELFQRKRTKKMERKSHDRKVSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLDSLEVYDLLHQYIMRTQQMPLLVHLPPIAIIVHHTVAQVQKPIIEWPKSYHRYRTSMMEKMDILNTWHYKISPHIARHLSATSFVEDLISPLLHILSPPSIRPVALQLLSDKEKNDIAQLVSTMVSYAITYEKMKSDMLPNTLKYGVKDELSLSLVPPISNFLNFKDYTSNHYVLSLAMKQVLVHEVEKHKILQANVKTMGLENGGHGAIEARNNCIPSANTNNHAAIVDKKTIESQANIFATKSNEAKTVSPNLNITNMVNSTEKVKLLDMGNRKKPSRTSSSFFDRFIKSNVKGLQNDDGSLQKETTSAKDRSPLLFKFNEGFTNAVRRPVRMREFLS 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04301 957 MobiDBLite consensus disorder prediction 52 75 - -
Vivi4g04301 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 530 IPR027417 -
Vivi4g04301 957 Pfam ATPase family associated with various cellular activities (AAA) 329 455 IPR003959 GO:0005524|GO:0016887
Vivi4g04301 957 CDD HLD_clamp_RFC 476 534 - -
Vivi4g04301 957 CDD AAA 324 413 - -
Vivi4g04301 957 MobiDBLite consensus disorder prediction 27 115 - -
Vivi4g04301 957 MobiDBLite consensus disorder prediction 420 439 - -
Vivi4g04301 957 MobiDBLite consensus disorder prediction 269 320 - -
Vivi4g04301 957 MobiDBLite consensus disorder prediction 76 100 - -
Vivi4g04301 957 SMART AAA_5 325 479 IPR003593 GO:0016887
Vivi4g04301 957 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 8 956 - -
Vivi4g04301 957 Gene3D - 212 474 IPR027417 -
Vivi4g04301 957 MobiDBLite consensus disorder prediction 298 312 - -
Vivi4g04301 957 Gene3D - 476 546 - -
Vivi4g04301 957 MobiDBLite consensus disorder prediction 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04301 Vivi-Chr4 169525606 169546145 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04301 323 783 Core DNA Replication Machinery Family AT5G22010 24.405 4.99e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04301 K11269 - gmx:100785041 1320.45