Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04294 ATGGACGACGACATGGACATGATGGACATGGACATTCCGCTCCCTGAAGAACTCGAATTGCTCGAATCAAGCTATCGTATCTACGAACAAGAAGACGATGACCACTACTTCTACAACCCTCCCGAAGATGAACTCGAACTCCAACCCGAACAATCCCCACCACCAGATCCCGCGTCTCCTTCCGAACCTCAATCCAAAAGCCACAAACGTTCTCGCTCGAATTCGAATTCCGATTTGAATTTGGATTCGGATTCTCCCGATGTTGAGAAGAGAGAGAAAGTTAGGGTTAGAGCTGAAGATCCTCCCGCGGACGAGGATTGGCTTCGGTACTCCCCTCCTCCTTCTCCAGTTAGAGCTGAAGAAGTGAGATTCTCCAAGGAAAAGACATTGTCGCGATTTGCATCGGAGATTGATGGTGAAGTTATGCCGGTGACTGCACCTAATGGAGATAGGGTTTATACTAAGCTAGATAGGTACTATGGTGAAGATCGAGCTACGAAGCTGAGTAGCGGAGCGTTTTCTTCTGATCTTGCTTTAGAACCGATCAGTGTTCTGTTTGAAAGGTTGGAGGAAGAGACTTTCGCTAAGACCTTGGAAGCTAGTTCTGAAAGCCAAAGTGTTGTAGATGTTCCTGAAACATTAACGCTCCATGAAAAACTTTGGGTAGATAAATACGCTCCAAAATCGTTTACTGATCTTCTTAGTGACGAGCAGACAAATCGTGAGGTACTATTATGGTTAAAACAATGGGATTCTACTGTGTTTGGATCTGAAATTCGAAGTACATCAGAGGATGTTTTGTCTGCTTTGAAACGGCATTCTACTATTTCCCATAATCAAAAACCTATGGGTTCAGGTTTTCCTAGGACAAAAGGAGGGCACGTATGGAGTAATAACAGGTATACAAATTCTAGAAGCAGGGATGAGAGTGATAATTCAAAGAGTAGTCAGGATACGCACAATACTAAGACACGGAATATTGGTGCACCGGAGCAGAAGATTCTTCTGCTATGTGGACCACCAGGCCTTGGAAAAACAACCCTTGCACATGTAGCGGCTAAGCATTGTGGATATCATGTGGTGGAGGTTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGACGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGACGGAAAGGGTGCTGTGGAGGCTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCCGATGCAGGGAAGCAGAGTTTGGATAAGGGACAAACAGAAAAGAAATCATCAAAGAAAGGGCGGAAAATTGCATCCCTGTCAAGACCCGTGATTTGCATATGTAATGATTTATACGCACCTGCCTTAAGATCATTACGTCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGAGTGGTAAACAGACTAAAATATATATGTAACAAGGAGACGGTGAAAGCCAATGCCATTGCACTCACTGCTTTAGCGGAATATACAGCATGTGATATACGCTCATGCTTGAACACACTCCAGTTTGTCTCCAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCGCAAGTTGTTGGTCAGAAGGACATGTCAAAAAATGTTCTAGACATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCTCATGATAGAAAGGCCTCTGAATTTGACACCTTGTACTCCCTTATATCATACCGTGGCGATAGTGACCTGATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACCGTCAAATGCCTCGACAGTCTCGAAGTTTATGATCTGTTGCATCAATATATAATGCGCACACAACAAATGCCTCTCCTTGTTCATTTGCCTCCTATAGCAATTATTGTACATCATACAGTAGCTCAAGTTCAGAAGCCAATCATTGAGTGGCCAAAGTCATATCACAGGTATCGAACATCAATGATGGAAAAGATGGACATTTTGAATACCTGGCACTACAAAATCTCGCCACATATTGCAAGGCACTTATCAGCTACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCACCAAGCATAAGACCGGTGGCACTACAACTACTATCAGATAAGGAGAAGAATGACATTGCTCAATTAGTTAGCACAATGGTGTCATATGCTATCACATATGAGAAAATGAAGTCAGATATGCTGCCTAATACCCTGAAGTATGGAGTGAAAGATGAATTGTCTCTGTCTCTTGTTCCTCCTATCAGTAACTTTTTAAACTTTAAGGATTATACTTCAAACCATTACGTACTTTCTTTAGCTATGAAGCAGGTTCTGGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATGTCAAAACCATGGGCTTAGAAAATGGAGGGCATGGAGCTATTGAGGCTCGAAATAACTGTATCCCATCTGCCATTACCAACAATCATGCAGCTATAGTTGATAAGAAAACCGTTAAAACTCAAGCTAATGTTTTTGCAACGAAATCAAATGAAGCCAAGACAGTTTCACCAAACTTGAATCTCACTAACATGGTAAATGCAACCGAGAAAGTGAAACTGCTAGACATGGGAAATAGGAAAAAACCATCTAGGACTTCCTCAAGTTTCTTCGACAGGTTTATAAAGTCAAATGATAAGGGTCTCCAAAATGATGATGGATCTCTACAGAAAGAAACCACATCAGTGAAAGACCGAAGCCCTTTACTTTTTAAGTTTAATGAGGGTTTTACAAATGCAGTCAGAAGGCCTGTTCGGATGCGTGAATTTCTGTCCTAG 2892 0.4136 MDDDMDMMDMDIPLPEELELLESSYRIYEQEDDDHYFYNPPEDELELQPEQSPPPDPASPSEPQSKSHKRSRSNSNSDLNLDSDSPDVEKREKVRVRAEDPPADEDWLRYSPPPSPVRAEEVRFSKEKTLSRFASEIDGEVMPVTAPNGDRVYTKLDRYYGEDRATKLSSGAFSSDLALEPISVLFERLEEETFAKTLEASSESQSVVDVPETLTLHEKLWVDKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSEDVLSALKRHSTISHNQKPMGSGFPRTKGGHVWSNNRYTNSRSRDESDNSKSSQDTHNTKTRNIGAPEQKILLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEALLKMISAERKPDAGKQSLDKGQTEKKSSKKGRKIASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVNRLKYICNKETVKANAIALTALAEYTACDIRSCLNTLQFVSKKKETLNAFDIGSQVVGQKDMSKNVLDIWKELFQRKRTKKMERKSHDRKASEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLDSLEVYDLLHQYIMRTQQMPLLVHLPPIAIIVHHTVAQVQKPIIEWPKSYHRYRTSMMEKMDILNTWHYKISPHIARHLSATSFVEDLISPLLHILSPPSIRPVALQLLSDKEKNDIAQLVSTMVSYAITYEKMKSDMLPNTLKYGVKDELSLSLVPPISNFLNFKDYTSNHYVLSLAMKQVLVHEVEKHKILQANVKTMGLENGGHGAIEARNNCIPSAITNNHAAIVDKKTVKTQANVFATKSNEAKTVSPNLNLTNMVNATEKVKLLDMGNRKKPSRTSSSFFDRFIKSNDKGLQNDDGSLQKETTSVKDRSPLLFKFNEGFTNAVRRPVRMREFLS 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04294 963 SMART AAA_5 331 485 IPR003593 GO:0016887
Vivi4g04294 963 MobiDBLite consensus disorder prediction 304 318 - -
Vivi4g04294 963 Pfam ATPase family associated with various cellular activities (AAA) 335 461 IPR003959 GO:0005524|GO:0016887
Vivi4g04294 963 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 8 962 - -
Vivi4g04294 963 Gene3D - 218 480 IPR027417 -
Vivi4g04294 963 MobiDBLite consensus disorder prediction 426 446 - -
Vivi4g04294 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 536 IPR027417 -
Vivi4g04294 963 Gene3D - 482 552 - -
Vivi4g04294 963 MobiDBLite consensus disorder prediction 47 61 - -
Vivi4g04294 963 CDD HLD_clamp_RFC 482 540 - -
Vivi4g04294 963 MobiDBLite consensus disorder prediction 23 123 - -
Vivi4g04294 963 CDD AAA 330 419 - -
Vivi4g04294 963 MobiDBLite consensus disorder prediction 83 106 - -
Vivi4g04294 963 MobiDBLite consensus disorder prediction 426 445 - -
Vivi4g04294 963 MobiDBLite consensus disorder prediction 275 326 - -
Vivi4g04294 963 FunFam Chromosome transmission fidelity protein 18 482 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04294 Vivi-Chr4 169284058 169304316 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04294 329 789 Core DNA Replication Machinery Family AT5G22010 24.405 1.03e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04294 K11269 - gmx:100785041 1300.42