Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04291 ATGTCTAGGAACATGAAGCATGGAAGAGGTTTTGCAAAAGGATATTCTGTTAATTTGTTGCTACTATTGAGTTTACTCTTTTGTAGCACAGAAGGGTTGAATTTAGAGGGTCAAATCCTCTTAAAGATCAAGAGTGGACTTCATGATAACTATAATCTTTTAGGAAATTGGAAATCTAGTGATGAAACTCCATGTGGATGGATAGGTGTAAATTGCATTTATGAAAATACCAGTGGTAGTGGTAGTGTTAGTGTTAGTGATCCGGTGGTTATTTCTCTTAATTTGAGTTCTATGGATCTTTCTGGAACTCTAAATAGTAGCATTGGGGGTCTTACCAAGTTAACTTATCTCAATCTTGCTTATAATGGTTTGACCGGGAACATCCCGAAGGAGATTGGTGAGTTGTTGAGTTTGAAATATCTTTACTTGAACAATAATCAATTTGAGGGACTGATTCCGGTTGAATTAGGTAAGTTGTCTGTTTTGAGAAATTTGAATATTTGCAACAATAAACTCTCGGGTGTTCTTCCGGACGAGTTTGGAAACTTGTCTTCTTTGGTTGAGTTAGTTGCGTATAGCAACTTTCTCGTTGGTCCGTTGCCCACTTCTGTTGGAAATCTTGAGAATCTCGAGACTTTCAGAGCTGGGGCGAATAACATTACTGGTAGCTTGCCGGAAGAAATTGGCAGATGCAGGAGCTTGGTACGTCTAGGTCTTGCTCAAAATCAGATTGACGGGGAGATACCGAAGGAGATTGGGATGCTCGAAAACTTAAAGGAATTGGTTTTATGGGAAAACAAGTTATCAGGAGTTGTTCCGAAAGAGCTTGGGAATTGTAGCAGGCTTGAGATCCTTGCTTTATACGGAAACAATCTTGTTGGACCGTTACCTCATGAGATCGGGAACTTGAAATCGTTGAAGTGGTTGTATCTTTACAGAAATAAGTTGAACGGATCCATTCCAAGGGAAATTGGAAATCTTTCTTCAGCTTTACACATTGATTTCTCGGAGAACTCATTGGCAGGCGATATTCCTTCGGAGTTCAGCAAAATCCGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAATCATCTAACTGGTGTGATACCAAATGAGTTTGGTAGTTTGAAGAACCTGACGAAGCTGGACCTGTCGATAAATAATCTTACTGGTCCGATTCCGTCCGGTTTTCAATATTTGACTCATATGTATCAGCTGCAACTTTTCGACAACAACCTAAGCGGTGTTATTCCTCAGGGACTTGGACTTTATAGTCATCTCTGGGTGGTTGATTTTTCCGACAACAACTTGACGGGAAATATACCTCCTCATCTATGCCGAAACTCTCATTTGATGCTGTTGAATCTCGCCGATAATCAGCTTTATGGAAACATACCAACAGGTATATTAAACTGTGAATCATTGGCACAGTTGCTTTTGGTTGGTAACAGGCTAAGTGGTGGTTTCCCTTCGGAATTGTGTAAACTTGAGAACCTTACCGCCATTGATTTGAATGATAACAGGTTTAGCGGCCCGCTTCCTCGTGAGATCGCAAATTGCCACAGTTTGCAAAGGCTTCATATTGCAAACAATTACTTCACATTGGAGTTGCCTAAGGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCGTCTAATCTTTTCACCGGAAGAATCCCTCCTGAAATTTTTTGGTGCCAGAGGCTGCAGCGGCTTGATCTCAGTCAGAACCGTTTTACTGATTCGTTGCCGAATGAAATCGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCGGATAATAAATTGTCCGGAAATATTCCTGCAGCATTAGGAAATCTGTCTCATTTGAACTGGCTGCTTATGGATGGTAATTTGTTTTCCGGCGAAATACCTCCTCAGTTGGGTTCTCTTTCGAGCTTACAGATAGCAATGGATCTCAGTTACAATAATCTTTCTGGAACAATACCTTCTCGGCTTGGCAATCTCAATATGCTTGAATATCTCTTTCTCAATAACAACCAATTGGATGGCGAAATTCCGAGTACCTTTAGCGCACTTTCTAGCTTGATGGGATGTAATTTCTCGCACAATAACCTCTCCGGTCCTATCCCTTCGACTAAAATTTTCGAAAGTATGGCTTTAAGCAGCTTTGTTGGTGGTAACGTAGGCCTTTGCGGTACACCTCTCGTTGACTGCAATAGTATTACAGCTTCTGGCTCTATTCCCTCGGCGAAAGACGGTGATTCTAAGCGTGCTAAAATTGTCATGGTCATTGCAGCTACCGTTGGCGGTGTTTCTCTCATTTTGATTTTGGTAATTTTATATTTAATGAGACGACCTCGGGAGCCTGTTGATTCCTTTGTAGACCCCGAAACTCTCTCGCCAGATTCGGATATCTATTTCCCTCCAAAAGACGGTTTCACATTTCAAGACCTACTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTCATTGGTAGCGGAGCATGCGGAACAGTTTATAAGGCCGTGATGAAATCCGGCAAGACAATTGCTGTTAAGAAGCTAGCGTCGAATCGGGAAGGGAACAACGTCGATAATAGTTTCAGGGCTGAAATATCGACCCTAGGAAGGATAAGGCATCGGAATATAGTGAAACTGTATGGATTTTGTTATCATCAAGGTTCCAATCTCTTACTCTATGAATACATGGAAAGAGGTAGCTTAGGTGAATTATTGCACGGTTCTGCAAGTAATTTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCCGAAGGCCTTGCTTACTTGCATCATGACTGTAAACCGAAGATTATTCACCGAGATATAAAATCCAACAACATCCTTCTAGATGAAAATTTTGAGGCCCATGTTGGTGATTTTGGCTTGGCGAAAGTGATTGACATGCCTCAGTCAAAGTCGATGTCCGCAGTCGCTGGGTCTTATGGATATATTGCTCCTGAATATGCATATACCATGAAGGTTACAGAAAAGTGTGACATATACAGTTACGGCGTTGTGCTGTTGGAATTGCTAACCGGAAAATCTCCAGTTCAACCGATGGAACAAGGAGGCGATCTTGTTACATGGACGAGAAACCATATCCGGAACCATGACAATACATTGAGCTCAGAGATACTCGATACTCGTCTTGATCTTGAAGACCAAATCACTATAAACCACATGCTCACTGTTTTGAAACTGGCTTTAATGTGCACGAGTATGTCTCCTAGTAAGCGTCCGTCAATGCGCGAAGTTGTGTTGATGCTCATCGAGTCGAATGAGCGAGAAGGAAACTTAACGCTTACTCGAACAAACCATGACCCTCCTCCTACTAAAGATAACACATGA 3363 0.4154 MSRNMKHGRGFAKGYSVNLLLLLSLLFCSTEGLNLEGQILLKIKSGLHDNYNLLGNWKSSDETPCGWIGVNCIYENTSGSGSVSVSDPVVISLNLSSMDLSGTLNSSIGGLTKLTYLNLAYNGLTGNIPKEIGELLSLKYLYLNNNQFEGLIPVELGKLSVLRNLNICNNKLSGVLPDEFGNLSSLVELVAYSNFLVGPLPTSVGNLENLETFRAGANNITGSLPEEIGRCRSLVRLGLAQNQIDGEIPKEIGMLENLKELVLWENKLSGVVPKELGNCSRLEILALYGNNLVGPLPHEIGNLKSLKWLYLYRNKLNGSIPREIGNLSSALHIDFSENSLAGDIPSEFSKIRGLSLLFLFENHLTGVIPNEFGSLKNLTKLDLSINNLTGPIPSGFQYLTHMYQLQLFDNNLSGVIPQGLGLYSHLWVVDFSDNNLTGNIPPHLCRNSHLMLLNLADNQLYGNIPTGILNCESLAQLLLVGNRLSGGFPSELCKLENLTAIDLNDNRFSGPLPREIANCHSLQRLHIANNYFTLELPKEIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNRFTDSLPNEIGTLQHLEILKLSDNKLSGNIPAALGNLSHLNWLLMDGNLFSGEIPPQLGSLSSLQIAMDLSYNNLSGTIPSRLGNLNMLEYLFLNNNQLDGEIPSTFSALSSLMGCNFSHNNLSGPIPSTKIFESMALSSFVGGNVGLCGTPLVDCNSITASGSIPSAKDGDSKRAKIVMVIAATVGGVSLILILVILYLMRRPREPVDSFVDPETLSPDSDIYFPPKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDNSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKSPVQPMEQGGDLVTWTRNHIRNHDNTLSSEILDTRLDLEDQITINHMLTVLKLALMCTSMSPSKRPSMREVVLMLIESNEREGNLTLTRTNHDPPPTKDNT 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04291 1120 SUPERFAMILY Protein kinase-like (PK-like) 802 1094 IPR011009 -
Vivi4g04291 1120 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 790 898 - -
Vivi4g04291 1120 Gene3D Transferase(Phosphotransferase) domain 1 899 1111 - -
Vivi4g04291 1120 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 201 294 - -
Vivi4g04291 1120 SMART serkin_6 821 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04291 1120 SUPERFAMILY L domain-like 397 715 - -
Vivi4g04291 1120 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672|GO:0006468
Vivi4g04291 1120 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 295 399 - -
Vivi4g04291 1120 ProSiteProfiles Protein kinase domain profile. 821 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04291 1120 Gene3D Ribonuclease Inhibitor 296 395 IPR032675 -
Vivi4g04291 1120 Gene3D Ribonuclease Inhibitor 195 295 IPR032675 -
Vivi4g04291 1120 Gene3D Ribonuclease Inhibitor 608 736 IPR032675 -
Vivi4g04291 1120 Gene3D Ribonuclease Inhibitor 516 607 IPR032675 -
Vivi4g04291 1120 Gene3D Phosphorylase Kinase; domain 1 796 898 - -
Vivi4g04291 1120 Gene3D Ribonuclease Inhibitor 445 515 IPR032675 -
Vivi4g04291 1120 Gene3D Ribonuclease Inhibitor 396 444 IPR032675 -
Vivi4g04291 1120 SMART LRR_sd22_2 664 690 - -
Vivi4g04291 1120 SMART LRR_sd22_2 303 329 - -
Vivi4g04291 1120 SMART LRR_sd22_2 495 521 - -
Vivi4g04291 1120 SMART LRR_sd22_2 375 401 - -
Vivi4g04291 1120 SMART LRR_sd22_2 591 617 - -
Vivi4g04291 1120 SMART LRR_sd22_2 135 156 - -
Vivi4g04291 1120 SMART LRR_sd22_2 183 209 - -
Vivi4g04291 1120 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 495 1095 - -
Vivi4g04291 1120 Gene3D Ribonuclease Inhibitor 32 194 IPR032675 -
Vivi4g04291 1120 MobiDBLite consensus disorder prediction 1101 1120 - -
Vivi4g04291 1120 Pfam Protein kinase domain 822 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04291 1120 Pfam Leucine Rich Repeat 137 159 IPR001611 GO:0005515
Vivi4g04291 1120 SMART LRR_typ_2 591 615 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 111 133 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 255 278 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 543 567 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 495 519 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 664 687 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 159 182 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 135 158 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 303 327 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 375 398 IPR003591 -
Vivi4g04291 1120 SMART LRR_typ_2 207 231 IPR003591 -
Vivi4g04291 1120 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 32 200 - -
Vivi4g04291 1120 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 899 1111 - -
Vivi4g04291 1120 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 423 738 - -
Vivi4g04291 1120 Pfam Leucine rich repeat 569 627 IPR001611 GO:0005515
Vivi4g04291 1120 Pfam Leucine rich repeat 257 316 IPR001611 GO:0005515
Vivi4g04291 1120 SUPERFAMILY L domain-like 37 328 - -
Vivi4g04291 1120 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04291 Vivi-Chr4 169248647 169253359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04291 33 1096 Receptor kinase-like Gene Family AT4G26540 38.262 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi4g04291 Pkinase 1.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04291 - - gmx:100805792 1782.3