Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04289 ATGAATTGGGTTCGTGGTGACTTACTAGGTAGTGGAACCTTCGCTACCGTCCACTTAGCCAAACATGTTAAACCTTCCGTTAACATTCCGTCTCTTACTGCCGTCAAATCATGTGAACTTTCCGATTCTCTTTCTCTCCAAAAGGAGAAAAATATATTGGAACGATTAACATCATGCCGACACATTATCAAATGTTTTGGTCACGATCAAACTTTTGAAAACGGGAAAGAGTATTACAATATTTTCCTAGAATATGCAAGCGGCGGAACTCTCGATGATCAACTCAAGAATCACGGCGGCAAGCTCCCAGAAAAGCTCGCTCGTCGCTACACAAGATCCGTGGTTGAAGGTCTGAAATATATTCACGAAAACGGTTTCATTCACTGCGACTTGAAACCACCAAACATTCTTGTATTCGAGAACGGAAACATAAAGATATCAGATTTCGGTCTTGCAAAAGAGATGGGAGTGGAAAAAGATAAAAAACTTGTAGGGACTCTACCGTTTATGTCACCGGAATCACTGATGGTGGACCGTGTGTATGAATCTCCGATAGATATATGGGCTCTCGGTTGCACCGTCCTGGAGATTCTTACCGGAGAACCCGTATGGAACATGGGTTACAACCCGGACATGTTCAAGTTGTTGGATCGAATTATAGTTGGAAAAGAAGTACCATTGATTCCAGATGAAATATCAGAAGAAGCAAAAGATTTTCTCAAAAAATGTTTAGTTAGGGATCCACTGAAAAGATGGAGTGCTGAGATGCTTTTGAAACACCCTTTTATCTCAGATGATAAAACAGTTTCTTCGGTTAAGGAGTCAACATTTTTATCGGCTTCCCCAATTACTCACTCTGACTATTCAAGCTGGAATTCTTCTACTGTTACAACATTGCCTTCCAACTCAAAGGAATGGAGTGAAATCGAATCTGATGTCAAACTATTAGATTGTTTGCCGAAAAAGAGGCTAGTACCACTAGTCACGAATAATTATTGTTTTGCTAGATCAATTTAG 1017 0.4022 MNWVRGDLLGSGTFATVHLAKHVKPSVNIPSLTAVKSCELSDSLSLQKEKNILERLTSCRHIIKCFGHDQTFENGKEYYNIFLEYASGGTLDDQLKNHGGKLPEKLARRYTRSVVEGLKYIHENGFIHCDLKPPNILVFENGNIKISDFGLAKEMGVEKDKKLVGTLPFMSPESLMVDRVYESPIDIWALGCTVLEILTGEPVWNMGYNPDMFKLLDRIIVGKEVPLIPDEISEEAKDFLKKCLVRDPLKRWSAEMLLKHPFISDDKTVSSVKESTFLSASPITHSDYSSWNSSTVTTLPSNSKEWSEIESDVKLLDCLPKKRLVPLVTNNYCFARSI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04289 338 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vivi4g04289 338 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Vivi4g04289 338 Pfam Protein kinase domain 6 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04289 338 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04289 338 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04289 338 Gene3D Transferase(Phosphotransferase) domain 1 2 321 - -
Vivi4g04289 338 CDD STKc_MAPKKK 2 263 - -
Vivi4g04289 338 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 310 - -
Vivi4g04289 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04289 Vivi-Chr4 169153123 169154139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04289 1 293 MAP Kinase Kinase Kinase AT4G36950 48.311 4.74e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi4g04289 Pkinase 8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04289 - - vvo:131598289 690.649