Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04280 ATGGAGGAGGATATGGAATTTGTTCCGATTGTTGATGTTCCTGATACCCCCGATAGATCAAATGTTAGAAACAATGATCGAAAATGTGTAGGTAATTGTGAGAACAGGGAGAGGGCTTTTCCTATTGATGGTGAAAAAAGTAACTGCAACAATTATATAATATTGTCCCCAGATAAACCTTATCCTTCTCAAAAGCCTTCCATGTTTAGGAGAGCCCAATCTGAGAAAGTTTTTGGACTTGGAACATCACGCTCTAGTGGAGCCGGGAAGATGGAGAAAGGGAAAACTCTAAGCTCTATGATTCCTTCTAAGTCATCTCACCATGGGAGCATTCCTGTTTTCGATTTGACTGAAGAGAATGGGCAGTTGCCACAGCCAAAGCTAGCTTTCTTACATCGTGGATCAAGAGATAACACAATTAAAGACAAGAAAGACTTGAAAGCAAGTATTGGTAACTCCTCGTTACCCTTAATCACTGATTCATCTGCCGCTACTGGAAAGTGTAAACTAGATAACAAAACACTTCCAGGTCCTCATCTATTTATGGACCGTGGCAAAAGCATTTCTCTGTCCAATGATTCTCAATCTCAATCTAAAGGTGAAAATCAACTTTCTTTGCCTCCTCGTTTGTCCACTGCTCCAGGGGGTAGAGGGCACAAGAGATTGGTACGAAATGGTTGCATTTCACCACAAAATATTGCAACAAGGGCAAAACAATCAGCTGAACAAAACCGCTCTGAAACCAATAATGTTGAACAGATCCGTACCGGGCATTCAGTTTCTAGTAATACAATGTCTCCAATTAGTGTTGATGATATTGTTGCTGAAGATAGAGACCGCGGTAGAGCGAAAGGAAAGGGGTTACTTATTCATCCTTCATCACACGGAGCTAATGCTGGAACTATTCACATCGATAGCAGCCCCGTGGTCAATCATGAAGAGGCCAGTGGTAGCCGTAATAAACCAAGAAATTCATTTGAAAACTGGGAGAGACAAGGTGGTTGGAGAACTACACGTAACAATCAACACTTGTATGGTGTGAATGGGCATCATTCAAGGAATAATTATAATGGTGAGAGATTTGTTCACAAACAGAATATGAACAGACTGGACAGAAGTGACACTGGGAGCAGTCAAAATGGTAAGCATATTTTTGGCTCTCTATCAGATCATACACCTCAACCTGCTTCGTTGATTAATCCAGATGTTGGTCAGTCAACTAGACCTAGTACTACCGCTGACTCGCTGACTAAAAGGCAAAGGAAACCTGAATCATCTTCTAGAAATCCTAATGTAGCATCTCATAACTCTGGAACTATATTCGTCAATTCATCTGGAGAATCATCAAGTTCATCCCGAAGTCGTGTCTTGGCTCCTGAAGTTGTTGAGTTGTTATCCATACCAAGTTTCACCAACGGACTTATTGAAGGTGAAAATGACAATGACAACAATAGTTCGGTTGCCCGGGCAATGCAATTAGAAGCAGATGAGATATTGGCACGCGAACTTCAAGAACAACTGTATAATGATGATTATTTTGAAAGCAGTTGGATTGATGAACATTTAGCACGGGAGCTGCAGGTTGATGAACATGTAGCACGGGAGCTGCAGGATGCAGGGGATCTTCTGCACACATCTACTGATAATCATCAGATACTTCATCCTACACGGATTTCGAGGGGAAATAGACAGCCTCGTTTACGACCTCATCAAAATCCTTCAAATAGGAGAACTTTGCCTCAAGTTCCTCTCTCTAATAGAGCCTCGCAGATTAGGAGCCGCATGACAACTAGATCGTCAAGACCTATCGTATCATCTAGAGGAAGAGGAAGACGCCCCCAGTTTCCCATAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTAATGATATGGGAATGGCTGATAACATCCTTAATGGTCATCGTGATTTCAATGAAGATGATTATGAAATGCTACTGGCTCTTGATGATCAAAACCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGCTTGCCTCAGTCCACCGTCCAGAATGACAACTTCACAGAGAACTGTGCCATATGTATCGAGACCCCTGTCAAAGGCGACATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGACTGTATTGATCCTTGGCTTGGTAGGAAAAGGTTGTGCCCGGTCTGCAAGTCATCAATCACCTAG 2229 0.4213 MEEDMEFVPIVDVPDTPDRSNVRNNDRKCVGNCENRERAFPIDGEKSNCNNYIILSPDKPYPSQKPSMFRRAQSEKVFGLGTSRSSGAGKMEKGKTLSSMIPSKSSHHGSIPVFDLTEENGQLPQPKLAFLHRGSRDNTIKDKKDLKASIGNSSLPLITDSSAATGKCKLDNKTLPGPHLFMDRGKSISLSNDSQSQSKGENQLSLPPRLSTAPGGRGHKRLVRNGCISPQNIATRAKQSAEQNRSETNNVEQIRTGHSVSSNTMSPISVDDIVAEDRDRGRAKGKGLLIHPSSHGANAGTIHIDSSPVVNHEEASGSRNKPRNSFENWERQGGWRTTRNNQHLYGVNGHHSRNNYNGERFVHKQNMNRLDRSDTGSSQNGKHIFGSLSDHTPQPASLINPDVGQSTRPSTTADSLTKRQRKPESSSRNPNVASHNSGTIFVNSSGESSSSSRSRVLAPEVVELLSIPSFTNGLIEGENDNDNNSSVARAMQLEADEILARELQEQLYNDDYFESSWIDEHLARELQVDEHVARELQDAGDLLHTSTDNHQILHPTRISRGNRQPRLRPHQNPSNRRTLPQVPLSNRASQIRSRMTTRSSRPIVSSRGRGRRPQFPIDMDLDMRLDILEALEDAVGDFNDMGMADNILNGHRDFNEDDYEMLLALDDQNHQHTGASTNLINSLPQSTVQNDNFTENCAICIETPVKGDIIRHLPCLHKFHKDCIDPWLGRKRLCPVCKSSIT 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04280 742 MobiDBLite consensus disorder prediction 285 357 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 170 270 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 187 209 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 80 108 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 426 454 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 565 604 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 370 454 - -
Vivi4g04280 742 ProSiteProfiles Zinc finger RING-type profile. 697 738 IPR001841 -
Vivi4g04280 742 CDD RING-H2_PA-TM-RING 697 738 - -
Vivi4g04280 742 SUPERFAMILY RING/U-box 684 741 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 371 414 - -
Vivi4g04280 742 FunFam RING/U-box superfamily protein 662 742 - -
Vivi4g04280 742 Pfam Ring finger domain 696 738 IPR001841 -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 330 357 - -
Vivi4g04280 742 PANTHER SI:CH211-59O9.10 275 742 - -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 545 615 - -
Vivi4g04280 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 742 IPR013083 -
Vivi4g04280 742 MobiDBLite consensus disorder prediction 228 269 - -
Vivi4g04280 742 SMART ring_2 697 737 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04280 Vivi-Chr4 168964940 168972498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04280 8 742 C3H Transcription Factor Family AT1G04790 32.650 3.55e-83 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04280 - - tpra:123897569 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04280 4 168964940 168972498 Vivi4g04280 4 168964940 168972498 ECH