Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04279 ATGGAGGAGGATATGGAATTTGTTCCGATTGTTGATGTTCCTGATACCCCCGATAGATCAAATGTTAGAAACAATGATCGAAAATGTGTAGGTAATTGTGAGAACAGGGAGAGGGCTTTTCCTATTGATGGTGAAAAAAGTAACTGCAACAATTATATAATATTGTCCCCAGATAAACCTTATCCTTCTCAAAAGCCTTCCATGTTTAGGAGAGCCCAATCTGAGAAAGTTTTTGGACTTGGAACATCACGCTCTAGTGGAGCCGGGAAGATGGAGAAAGGGAAAACTCTAAGCTCTATGATTCCTTCTAAGTCATCTCACCATGGGAGCATTCCTGTTTTCGATTTGACTGAAGAGAATGGGCAGTTGCCACAGCCAAAGCTAGCTTTCTTACATCGTGGATCAAGAGATAACACAATTAAAGACAAGAAAGACTTGAAAGCAAGTATTGGTAACTCCTCGTTACCCTTAATCACTGATTCATCTGCCGCTACTGGAAAGTGTAAACTAGATAACAAAACACTTCCAGGTCCTCATCTATTTATGGACCGTGGCAAAAGCATTTCTCTGTCCAATGATTCTCAATCTCAATCTAAAGGTGAAAATCAACTTTCTTTGCCTCCTCGTTTGTCCACTGCTCCAGGGGGTAGAGGGCACAAGAGATTGGTACGAAATGGTTGCATTTCACCACAAAATATTGCAACAAGGGCAAAACAATCAGCTGAACAAAACCGCTCTGAAACCAATAATGTTGAACAGATCCGTACCGGGCATTCAGTTTCTAGTAATACAATGTCTCCAATTAGTGTTGATGATATTGTTGCTGAAGATAGAGACCGCGGTAGAGCGAAAGGAAAGGGGTTACTTATTCATCCTTCATCACACGGAGCTAATGCTGGAACTATTCACATCGATAGCAGCAGCCCCGTGGTCAATCATGAAGAGGCCAGTGGTAGCCGTAATAAACCAAGAAATTCATTTGAAAACTGGGAGAGACAAGGTGGTTGGAGAACTACACGTAACAATCAACACTTGTATGGTGTGAATGGGCATCATTCAAGGAATAATTATAATGGTGAGAGATTTGTTCACAAACAGAATATGAACAGACTGGACAGAAGTGACACTGGGAGCAGTCAAAATGGTAAGCATATTTTTGGCTCTCTATCAGATCATACACCTCAACCTGCTTCGTTGATTAATCCAGATGTTGGTCAGTCAACTAGACCTAGTACTACCGCTGACTCGCTGACTAAAAGGCAAAGGAAACCTGAATCATCTTCTAGAAATCCTAATGTAGCATCTCATAACTCTGGAACTATATTCGTCAATTCATCTGGAGAATCATCAAGTTCATCCCGAAGTCGTGTCTTGGCTCCTGAAGTTGTTGAGTTGTTATCCATACCAAGTTTCACCAACGGACTTATTGAAGGTGAAAATGACAATGACAACAATAGTTCGGTTGCCCGGGCAATGCAATTAGAAGCAGATGAGATATTGGCACGCGAACTTCAAGAACAACTGTATAATGATGATTATTTTGAAAGCAGTTGGATTGATGAACATTTAGCACGGGAGCTGCAGGTTGATGAACATGTAGCACGGGAGCTGCAGGATGCAGGGGATCTTCTGCACACATCTACTGATAATCATCAGATACTTCATCCTACACGGATTTCGAGGGGAAATAGACAGCCTCGTTTACGACCTCATCAAAATCCTTCAAATAGGAGAACTTTGCCTCAAGTTCCTCTCTCTAATAGAGCCTCGCAGATTAGGAGCCGCATGACAACTAGATCGTCAAGACCTATCGTATCATCTAGAGGAAGAGGAAGACGCCCCCAGTTTCCCATAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTAATGATATGGGAATGGCTGATAACATCCTTAATGGTCATCGTGATTTCAATGAAGATGATTATGAAATGCTACTGGCTCTTGATGATCAAAACCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGCTTGCCTCAGTCCACCGTCCAGAATGACAACTTCACAGAGAACTGTGCCATATGTATCGAGACCCCTGTCAAAGGCGACATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGACTGTATTGATCCTTGGCTTGGTAGGAAAAGGTTGTGCCCGGTCTGCAAGTCATCAATCACCTAG 2232 0.4216 MEEDMEFVPIVDVPDTPDRSNVRNNDRKCVGNCENRERAFPIDGEKSNCNNYIILSPDKPYPSQKPSMFRRAQSEKVFGLGTSRSSGAGKMEKGKTLSSMIPSKSSHHGSIPVFDLTEENGQLPQPKLAFLHRGSRDNTIKDKKDLKASIGNSSLPLITDSSAATGKCKLDNKTLPGPHLFMDRGKSISLSNDSQSQSKGENQLSLPPRLSTAPGGRGHKRLVRNGCISPQNIATRAKQSAEQNRSETNNVEQIRTGHSVSSNTMSPISVDDIVAEDRDRGRAKGKGLLIHPSSHGANAGTIHIDSSSPVVNHEEASGSRNKPRNSFENWERQGGWRTTRNNQHLYGVNGHHSRNNYNGERFVHKQNMNRLDRSDTGSSQNGKHIFGSLSDHTPQPASLINPDVGQSTRPSTTADSLTKRQRKPESSSRNPNVASHNSGTIFVNSSGESSSSSRSRVLAPEVVELLSIPSFTNGLIEGENDNDNNSSVARAMQLEADEILARELQEQLYNDDYFESSWIDEHLARELQVDEHVARELQDAGDLLHTSTDNHQILHPTRISRGNRQPRLRPHQNPSNRRTLPQVPLSNRASQIRSRMTTRSSRPIVSSRGRGRRPQFPIDMDLDMRLDILEALEDAVGDFNDMGMADNILNGHRDFNEDDYEMLLALDDQNHQHTGASTNLINSLPQSTVQNDNFTENCAICIETPVKGDIIRHLPCLHKFHKDCIDPWLGRKRLCPVCKSSIT 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04279 743 MobiDBLite consensus disorder prediction 170 270 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 187 209 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 290 358 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 80 108 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 299 315 - -
Vivi4g04279 743 PANTHER SI:CH211-59O9.10 275 743 - -
Vivi4g04279 743 SUPERFAMILY RING/U-box 685 742 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 546 616 - -
Vivi4g04279 743 SMART ring_2 698 738 IPR001841 -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 427 455 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 371 455 - -
Vivi4g04279 743 CDD RING-H2_PA-TM-RING 698 739 - -
Vivi4g04279 743 Pfam Ring finger domain 697 739 IPR001841 -
Vivi4g04279 743 ProSiteProfiles Zinc finger RING-type profile. 698 739 IPR001841 -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 372 415 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 228 269 - -
Vivi4g04279 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 743 IPR013083 -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 331 358 - -
Vivi4g04279 743 FunFam RING/U-box superfamily protein 663 743 - -
Vivi4g04279 743 MobiDBLite consensus disorder prediction 566 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04279 Vivi-Chr4 168964940 168972498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04279 8 743 C3H Transcription Factor Family AT1G04790 32.609 4.90e-83 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04279 - - tpra:123897569 1027.31