Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04271 ATGGAAGCCCTTGGTTCTGTGGATGACCTTTTGGATTTCTCATCTGACATAGGCGAGGATGACGATGACAACACTAAGAAAGCCTTTCCTTCACTTAAACCAAAATGCGGTGATCCACTGTCGCTTGATACATTGGACCTGGCCGATCCAAATTCATTTTCTGAGTGTGCAGAAGAAGAGCTTGAATGGTTATCCAACAAAGATGCGTTTCCGGCTGTGGAAACATTTGTTGACTTGGCCTGTATTCAACCAGATATTTTGAAGTATCAAAGGACAACCCCGATGCTCGAGAACAGCACAAGCAGTAGCAACAGCAATAACAGTAGCAACAGCATTACCCTGCTAAGTGGCTACAATCACATAAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGCAGTAAGCCTCGCATTGGCCTTGCTGACACCTCTAACCAGCTATTCTCGTGGAGACTACCGAGTAACAAAGTTTCAAAAGAACGAGTACAAACCTTGGCCATTGGGAGGAAATGTACTCACTGTGGAGCCGAGAGTACTCCACAATGGCGGGCAGGTCCAAATGGTCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTGCCTGAATACCGCCCTGCAAATAGCCCAACTTTTCGCAGTGACGTGCATTCTAATTCCCACAGGAAAGTATTGGAGATGAGGAAGCATAAGGGAATGGGTTGA 717 0.4658 MEALGSVDDLLDFSSDIGEDDDDNTKKAFPSLKPKCGDPLSLDTLDLADPNSFSECAEEELEWLSNKDAFPAVETFVDLACIQPDILKYQRTTPMLENSTSSSNSNNSSNSITLLSGYNHIKFPVRARSKSRSKPRIGLADTSNQLFSWRLPSNKVSKERVQTLAIGRKCTHCGAESTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRSDVHSNSHRKVLEMRKHKGMG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04271 238 ProSitePatterns GATA-type zinc finger domain. 170 195 IPR000679 GO:0006355|GO:0043565
Vivi4g04271 238 Pfam GATA zinc finger 170 203 IPR000679 GO:0006355|GO:0043565
Vivi4g04271 238 Gene3D - 165 216 IPR013088 GO:0006355|GO:0008270
Vivi4g04271 238 ProSiteProfiles GATA-type zinc finger domain profile. 164 200 IPR000679 GO:0006355|GO:0043565
Vivi4g04271 238 SMART GATA_3 164 214 IPR000679 GO:0006355|GO:0043565
Vivi4g04271 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 228 - -
Vivi4g04271 238 CDD ZnF_GATA 169 217 IPR000679 GO:0006355|GO:0043565
Vivi4g04271 238 FunFam GATA transcription factor 159 238 - -
Vivi4g04271 238 MobiDBLite consensus disorder prediction 1 30 - -
Vivi4g04271 238 PANTHER GATA TRANSCRIPTION FACTOR 7 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04271 Vivi-Chr4 168901346 168904667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04271 1 238 C2C2-Gata Transcription Factor Family AT3G24050 39.928 2.86e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g04271 GATA 5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04271 - - psat:127090991 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04271 4 168901346 168904667 Vivi4g04271 4 168901346 168904667 ECH
Vivi4g04271 4 168901346 168904667 Vivi4g00622 4 13763713 13764758 PCT