Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04254 ATGAGTAATAACACTGCCGATGAGTATCCTAATTTCTTCAAAGTCTTCCTTACAGAAAAACACTCTCACAGAATGCTTATCCCAGCTGCTTTTGTGAAGCTGATGTTTTCAAAACAAAAGGTATTGAGAGATTATATCTTTAGAGATCAAAGAGGAAGAGATTGGAAAGTCAAAGCACGGCCTATTGACGGAAAGCTTTATTTTGAGGATGGTTGGAAGCGATTTAAAGATGATAATTCTTTAGAGCAGAATGACTTCATTGTTTTCACACATATTGAAAACAATGTGTTCAACATTAAAATTCTTGAACTCTCATCTATGTGTGAAAAGATCAAGGTAATGGATCAAGAGGAAAGGAATGATGATGATGATGATGATGATAAGAAAGAAAATGGTGATGGTCATGATGATGATGATAATGTTGTTGTTGTTGATGATGGTGATGATGATGATGATGATTACAATGATGATGAAGATGTTGATGATGATGACGATGAGGATGATGATGATGATGATGATGATATTACGGATGATGACGATGACCATGAAGTTAGTAAAAATAAATGTCAACATTGTAGAATCTGCAAAGCATGTGGCACCGGGAGCAGCTCTATGGTTCGAGAACTTGAAACAAATGAAATTGATGCTGAAATGTATATTCAGCCTGGAAATCCCTACTTTTTTGCGAAATATTATCATTACAGACCCAACGAATTGCATATTCCAAAGAAGATTATTAAGGATTTCTGCCTTTGCCTCACAAAACAAATCAACCTAGTATGTTGCCACTGCAAGGATATTCAGAGCAACGAAATAGCATCCTATCATGAGAAGTTGCCAAACACGACCACAAAACATGCCAAAAAAAGAGGAGAAATACGTGCATGGAGAAATGGTCGAGTATTTGTGCTGGGATGGGTGGATTTTTGGGCCAAGTACAAGATCAAAGAAAGTGATATCTGCTTGTGTGAAATTGTGTTGCGTGAAGAGAAAGCAATAGAAATGATAAGGGTGCATGTTGTTAGGAAGGTTATGAAGGAACCCTTAGCATTGCAACTTCTACAACATATCTCTCTCTTTTCTCTCTTCTCTCTGAAAAATCACAAAAGAAGTAAATTAAAGATGGTGAAAGAGTTCCCTGATTTCTACAAAGTCTTCCTCACAGAGAAGGATTATGAGAGAATGCTTATACCAAATGCTTTTGTGAACTTGCTGAATTCCAAAAAGAGGGTAATGCCAGATTTTATCCTAAGAAATCACAGTGGTAGAGATTGGCATGTCAAAGCGCTTAGTATCGGTCACGAGCTTTACTTTGATGATGGCTGGAAAAGGTTCAAACAAGAAAATTCTTTAGAGGATAATGACTACATTGTTTTCACGCATATTGAAAACAATGTATTCAAGTTCAAAATCCTCGAATTATCATCGATGTGTGAAAAGGAGAAGGTAAATGTTGAGGTGGAAAAGAATAATAGAGTGAATGGTGAGAATGAGAATAAACATCAACATTGCAGATCCTGCAATCCTTGGTGCATTGGAAGCAGTTCTGAAGTTTCGAAACTCGAAGACGAGGAAGTTGATGCTGAAATGTATATTCAACAGGGAAATCCTTACTTTCTCACAAAATATATTTATTACAGACCCAACGAATTGTATATTCCAAAAAATGTGACTAAGGATCTATGCCTTTGCTTCACAAAGCATATCACTCTTGTATGTTGTCACTGCAAGGATGTTCAAGGAAATGAAATAGCTGCATATCATCACATCTTGCCACAAATCAACACGAAACATATCGAAAAGAGAGGTAAAATACGTACGTGGAGAGATGGCCGAGTGTTTGTGCAAGGGTGGGAGGATTTTTGTAGAAAAAGCAAGATTACAGAAAAGGATATATGCTTATGTGAACTTGTGCTGCACGAAGATGGAATGGTCGAAATGTTAAGGGTGCATGTTGTTAATGTTAGGAAGGAATGA 1977 0.3682 MSNNTADEYPNFFKVFLTEKHSHRMLIPAAFVKLMFSKQKVLRDYIFRDQRGRDWKVKARPIDGKLYFEDGWKRFKDDNSLEQNDFIVFTHIENNVFNIKILELSSMCEKIKVMDQEERNDDDDDDDKKENGDGHDDDDNVVVVDDGDDDDDDYNDDEDVDDDDDEDDDDDDDDITDDDDDHEVSKNKCQHCRICKACGTGSSSMVRELETNEIDAEMYIQPGNPYFFAKYYHYRPNELHIPKKIIKDFCLCLTKQINLVCCHCKDIQSNEIASYHEKLPNTTTKHAKKRGEIRAWRNGRVFVLGWVDFWAKYKIKESDICLCEIVLREEKAIEMIRVHVVRKVMKEPLALQLLQHISLFSLFSLKNHKRSKLKMVKEFPDFYKVFLTEKDYERMLIPNAFVNLLNSKKRVMPDFILRNHSGRDWHVKALSIGHELYFDDGWKRFKQENSLEDNDYIVFTHIENNVFKFKILELSSMCEKEKVNVEVEKNNRVNGENENKHQHCRSCNPWCIGSSSEVSKLEDEEVDAEMYIQQGNPYFLTKYIYYRPNELYIPKNVTKDLCLCFTKHITLVCCHCKDVQGNEIAAYHHILPQINTKHIEKRGKIRTWRDGRVFVQGWEDFCRKSKITEKDICLCELVLHEDGMVEMLRVHVVNVRKE 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04254 658 SUPERFAMILY DNA-binding pseudobarrel domain 220 326 IPR015300 -
Vivi4g04254 658 CDD B3_DNA 10 102 IPR003340 GO:0003677
Vivi4g04254 658 CDD B3_DNA 380 472 IPR003340 GO:0003677
Vivi4g04254 658 MobiDBLite consensus disorder prediction 118 132 - -
Vivi4g04254 658 Gene3D - 519 657 IPR015300 -
Vivi4g04254 658 Gene3D - 206 344 IPR015300 -
Vivi4g04254 658 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Vivi4g04254 658 PANTHER B3 DOMAIN-CONTAINING 4 330 - -
Vivi4g04254 658 MobiDBLite consensus disorder prediction 115 184 - -
Vivi4g04254 658 Pfam B3 DNA binding domain 12 101 IPR003340 GO:0003677
Vivi4g04254 658 Pfam B3 DNA binding domain 384 471 IPR003340 GO:0003677
Vivi4g04254 658 SUPERFAMILY DNA-binding pseudobarrel domain 379 473 IPR015300 -
Vivi4g04254 658 ProSiteProfiles B3 DNA-binding domain profile. 10 105 IPR003340 GO:0003677
Vivi4g04254 658 MobiDBLite consensus disorder prediction 139 180 - -
Vivi4g04254 658 SUPERFAMILY DNA-binding pseudobarrel domain 533 649 IPR015300 -
Vivi4g04254 658 Gene3D - 4 108 IPR015300 -
Vivi4g04254 658 Gene3D - 373 478 IPR015300 -
Vivi4g04254 658 ProSiteProfiles B3 DNA-binding domain profile. 380 475 IPR003340 GO:0003677
Vivi4g04254 658 SMART B3_2 382 475 IPR003340 GO:0003677
Vivi4g04254 658 SMART B3_2 12 105 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04254 379 652 B3 DNA Binding Superfamily AT3G06160 24.920 2.98e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g04254 B3 1.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04254 - - vvo:131598282 994.956