Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04228 ATGGCTCTCACAAACTTTCTTGTTTGTACTCATCTTTCACTTGTCGGTTCTTGTTCTCACTACTGTTCCGATGCTGAGATAACAGTTACCAAGAAACGAAAACGTGTGCAACAAGTAACCTATGATGTTGAACAACCTGAATCTGTTTGCATACATCTATCACTTTCTTGTCACTGCATGGATGGAACACAAATCACTAAGAAAACAAAATGTTCCCAACAAGCGACAAATCTTGATGGTTCTTGGAAGATCAAGAAGGTGCTAGAAAAGAGTGATCTTGGCAACAATTGTAGACTTTTGGTGAGTAAAGAATTGGCTAAGGAGTTTGTGATTCCTTACCTGGCCGGTGGTGCGGAGGCTGCTAAGGAAAAAGAAGGAGTTGAAGTTCGAATATTGGATATTGACGACAACACTCTCCATTCTCTCAGTTTCAAGATATGGACTTCGGTTCAAAGTTACGTTTTCACCAAGAGATGGATCAGAGAATTTGTTCATCAGGAGGAACTTAAAAAAAGGAGATGA 522 0.3985 MALTNFLVCTHLSLVGSCSHYCSDAEITVTKKRKRVQQVTYDVEQPESVCIHLSLSCHCMDGTQITKKTKCSQQATNLDGSWKIKKVLEKSDLGNNCRLLVSKELAKEFVIPYLAGGAEAAKEKEGVEVRILDIDDNTLHSLSFKIWTSVQSYVFTKRWIREFVHQEELKKRR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04228 173 CDD B3_DNA 82 170 IPR003340 GO:0003677
Vivi4g04228 173 SUPERFAMILY DNA-binding pseudobarrel domain 82 170 IPR015300 -
Vivi4g04228 173 Gene3D - 78 173 IPR015300 -
Vivi4g04228 173 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 57 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04228 Vivi-Chr4 168351658 168352179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04228 84 172 RAV Transcription Factor Family AT1G51120 30.769 3.56e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04228 - - vvo:131598278 345.125