Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04226 ATGTATTGGGGTGGAGTTATGGCTGGCCAAATTGGTCATGGTATGATGGAGGAAGATGTATGGAGAAAAGGACCCTGGACTGCTGAAGAAGATAGGTTGCTTATTGAGTATGTTAGGCTGCATGGTGAAGGTAGATGGAACTCTGTTGCTAGACTTACAGGATTGAAAAGGAATGGAAAGAGTTGCAGATTGAGATGGGTGAATTATCTTAGGCCTGATCTCAAAAGGGGTCAAATAACACCTCAAGAAGAGAACATAATTCTAGAGCTTCATGCTAGGTGGGGAAACAGATGGTCAACAATTGCAAGAAGCTTACCAGGAAGAACAGATAATGAAATAAAAAATTACTGGAGGACTCATTTCAAGAAAAAGGCAAAAAGACCATCTGATGCTGCCGAAAAGGCGAAAAACCGAATCATGAGGAAGCAGTTATTTCATCATCAACAACAACTGTTAAATCAGCAGCAGCAGCAACAACTTCAATTCAACTTGGACATTTCCAAGTTTGAAGAAAATAATAATAGATTTCCTTATATATCTCAAACTAGACAAGAAATGTTGAACAACATTTGTCCAAACACAACAGAAGAACAGGGAAACTTTATGCTCAATGGAAATTATTCTGTGCCAGATTCTTCAACAGATGAAAATTTGTGGGATGGTATGTGGAATTTGGATGATGTTCAAGGAAATTTCAGTAACAAAACTGGTTTATATAATTTAGTTGCTCCTTATTGCTAG 741 0.3779 MYWGGVMAGQIGHGMMEEDVWRKGPWTAEEDRLLIEYVRLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKRGQITPQEENIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKRPSDAAEKAKNRIMRKQLFHHQQQLLNQQQQQQLQFNLDISKFEENNNRFPYISQTRQEMLNNICPNTTEEQGNFMLNGNYSVPDSSTDENLWDGMWNLDDVQGNFSNKTGLYNLVAPYC 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04226 246 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Vivi4g04226 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Vivi4g04226 246 FunFam MYB-related transcription factor 80 124 - -
Vivi4g04226 246 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Vivi4g04226 246 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Vivi4g04226 246 FunFam Myb transcription factor 23 75 - -
Vivi4g04226 246 CDD SANT 80 121 IPR001005 -
Vivi4g04226 246 Gene3D - 80 164 - -
Vivi4g04226 246 SMART sant 22 72 IPR001005 -
Vivi4g04226 246 SMART sant 75 123 IPR001005 -
Vivi4g04226 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 70 IPR017930 -
Vivi4g04226 246 Gene3D - 23 75 - -
Vivi4g04226 246 CDD SANT 25 70 IPR001005 -
Vivi4g04226 246 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Vivi4g04226 246 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Vivi4g04226 246 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 188 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04226 Vivi-Chr4 168302149 168303528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04226 16 246 MYB Transcription Factor Family AT4G13480 55.849 1.94e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g04226 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04226 K09422 - gmx:100795981 372.089