Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04217 ATGTCGCTGCCGGAATGTTCCGCTACGCAACTAGCGCAGCTCATCGGTCCCAACGCTACAAACGCCTTGGCCGCCGCAGATTTCATCTGCAATCAGTTCACAGCCGTGGGAAAAAAGTTCGTCGACACACAATACGCCGTGGATACCACTTATCTTCTATTCTCAGCTTATCTTGTTTTCTCTATGCAACTTGGTTTCGCTATGCTCTGTGCCGGTTCAGTTCGAGCCAAAAACACCATGAACATCATGCTTACAAACGTCCTAGACGCCGCTGCCGGTGGACTGTTTTACTATCTCTTCGGTTTTGCCTTTGCCTTCGGTGGACCTTCAAACGGTTTCATCGGAAAACATTTCTTTGGCCTCAAAGATGTTCCTTCAGTAGCTTTTGATTACAGTTATTTTCTATACCAGTGGGCTTTCGCCATAGCAGCCGCCGGTATCACCAGCGGCTCTATCGCAGAACGAACACAGTTCGTTGCTTATCTTATCTACTCTTCCTTTCTCACTGGCTTTGTTTACCCTGTTGTTTCTCATTGGTTTTGGTCCAGTGATGGTTGGGCTAGCGCAACCAACACCGGGAACCTCTTGTTTAGCACCGGAGTTATCGATTTTGCTGGCTCCGGTGTTGTTCATATGGTTGGTGGTATAGCTGGTCTTTGGGGCGCGTTGATTGAAGGTCCGCGTATCGGTCGATTCGATCACAATGGTCGAGCCGTCACTCTTCGCGGACACAGCGCTTCTTTGGTAGTTCTCGGAACTTTCATGCTTTGGTTTGGTTGGTATGGTTTCAACCCTGGTTCCTTCACCAAGATTCTAAGCGCTTATGACTCAGGTACTTATTATGGGCAATGGAGTGCGGTGGGGAGAACGGCGGTGACGACGACACTGGCAGGTTGTACGGCGGCGTTGACTACACTTTTTGGGAAAAGAATTCTCTCCGGTCACTGGAACGTTACCGATGTGTGTAACGGGTTACTAGGCGGATTCGCCGCCATAACCGCCGGGTGTTCTGTCGTGGAGCCATGGGCAGCCATCGTGTGTGGATTTATAGCAGCGGTGGTTCTGATCTCGTGTAACGTACTCGCGGAAAAGGTGCGTTACGATGATCCATTAGAAGCAGCGCAGCTTCACGGAGGATGTGGCGCGTGGGGTATAATATTCACCGCTTTGTTTGCTAAAGAAGAGTATGTGAACCAGGTTTACCCGGGTAAACCGGGTCGACCATATGGGTTATTTATGGGTGGTGGAGGGAAGTTATTAGGGGCACATGTGATACAAATATTGGTTATTATTGGGTGGGTTAGTGCAACTATGGGTCCTCTTTTCTTTGCTTTGAATAAAATGAAGTTGTTAAGGATCTCAGCTGAAGATGAACTTGCGGGTATGGATTTGACCCGACATGGTGGGTTTGCTTATGCTTATGAAGATGAGTCACATAAACATGGGATTCAATTGAGGAAAGTTGATCATAACTCTTCTTCTACTCCTACTCCCAATCCCACCACAGATTTGTGA 1515 0.4825 MSLPECSATQLAQLIGPNATNALAAADFICNQFTAVGKKFVDTQYAVDTTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGGPSNGFIGKHFFGLKDVPSVAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSSDGWASATNTGNLLFSTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHNGRAVTLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYDSGTYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIAAVVLISCNVLAEKVRYDDPLEAAQLHGGCGAWGIIFTALFAKEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFALNKMKLLRISAEDELAGMDLTRHGGFAYAYEDESHKHGIQLRKVDHNSSSTPTPNPTTDL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04217 504 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vivi4g04217 504 FunFam Ammonium transporter 29 487 - -
Vivi4g04217 504 NCBIfam ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi4g04217 504 Gene3D Ammonium transporter AmtB like domains 28 492 IPR029020 -
Vivi4g04217 504 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vivi4g04217 504 MobiDBLite consensus disorder prediction 488 504 - -
Vivi4g04217 504 SUPERFAMILY Ammonium transporter 45 453 - -
Vivi4g04217 504 MobiDBLite consensus disorder prediction 485 504 - -
Vivi4g04217 504 PANTHER AMMONIUM TRANSPORTER 26 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04217 Vivi-Chr4 168122401 168124591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04217 5 498 Inorganic Solute Cotransporters AT4G13510 81.511 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04217 K03320 - egt:105950262 835.484