Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04210 ATGGCTACTGCTGCTGCAGGCATAGCCTCCTTGTTTTCATCTTCCATCAACACTGTCAAATCTCCACGTTCCAAAACCTTCTCAACAGATACATCCTCATACCGCATTTTTGCATCTCTTACATCACAATCCTCAGTTGAACCTTTGTGCATTGGTACAACAATCTCATCACACAAGTTATGGATGCCTAGATTTTCTGTTGCTGTTGCTCAGGATGAGGCTGTTGTGGCTGTTGATGATGAAGAGAAGGCTGTGGTAGAGGAGGAAGAAAAAGAACAAGAACAAGCACAAGAAGAGAAGGAGAGTGGAGGGGAGATTGTTGCAGAAGTAGATACTAGGACTAAGCTTTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGGGCTAATTGAGGATTTTGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACCATGAGTTGTGTTGAAGATTGTAATGCAGTAATCAAAAATCTTGATGGAAAAGAGTTCATGGGGCGAACCTTGCGGGTGAATTTCTCAGACAAACCGAAGCCAAAAGAACCGTTGTACCCTGAAACCGAATTCAAGCTTTTTGTTGGGAACTTGTCTTGGACAGTAACTTCTGAGAGTCTGACAGAAGCCTTTCAAGAACACGGAACCGTGGTTGGAGCTAGGGTGTTATATGATGGAGAAACCGGAAAGTCTCGCGGCTATGGCTTTGTTTCCTATGCCAATAGATCAGAAATGGAAGCTGCTCTTACAATCATGAATGATGTGGAGCTAGACGGCCGGACATTGCGCGTAAGTTTGGCGCAAGGAAAACGATCATAA 861 0.4379 MATAAAGIASLFSSSINTVKSPRSKTFSTDTSSYRIFASLTSQSSVEPLCIGTTISSHKLWMPRFSVAVAQDEAVVAVDDEEKAVVEEEEKEQEQAQEEKESGGEIVAEVDTRTKLYFGNLPYSVDSAQLAGLIEDFGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIKNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEFKLFVGNLSWTVTSESLTEAFQEHGTVVGARVLYDGETGKSRGYGFVSYANRSEMEAALTIMNDVELDGRTLRVSLAQGKRS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04210 286 Coils Coil 78 106 - -
Vivi4g04210 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Vivi4g04210 286 FunFam 31 kDa ribonucleoprotein, chloroplastic 70 195 - -
Vivi4g04210 286 SUPERFAMILY RNA-binding domain, RBD 111 197 IPR035979 GO:0003676
Vivi4g04210 286 PANTHER OS02G0815200 PROTEIN 38 285 - -
Vivi4g04210 286 SMART rrm1_1 206 279 IPR000504 GO:0003723
Vivi4g04210 286 SMART rrm1_1 115 188 IPR000504 GO:0003723
Vivi4g04210 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Vivi4g04210 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 277 IPR000504 GO:0003723
Vivi4g04210 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 186 IPR000504 GO:0003723
Vivi4g04210 286 FunFam 28 kDa ribonucleoprotein, chloroplastic 196 286 - -
Vivi4g04210 286 SUPERFAMILY RNA-binding domain, RBD 198 285 IPR035979 GO:0003676
Vivi4g04210 286 Gene3D - 68 194 IPR012677 -
Vivi4g04210 286 Gene3D - 195 286 IPR012677 -
Vivi4g04210 286 CDD RRM2_NsCP33_like 206 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04210 Vivi-Chr4 168084720 168086923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04210 97 284 Eukaryotic Initiation Factors Gene Family AT2G23350 32.836 5.38e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04210 - - aprc:113871254 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05620 6 161998805 162000760 Vivi4g04210 4 168084720 168086923 PCT