Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04207 ATGGCAGCCGCAAGACCCCTTGTCACCGTCCAGGCACTGGACTCCGACATAGCCACTGATTCCCCAACCACCCTACCCATTCCCGACGTAATGCGCGCCTCAATCCGCCCTGACATCGTCAATTTCGTCCACTCCAACATTTCCAACAACAGCCGCCAACCCTACGCCGTCAGCCGCAAAGCCGGTCACCAAACCTCCGCCGAATCATGGGGAACCGGTCGTGCTGTCTCCCGTATTCCCCGTGTTGCCGGTGGTGGAACCCACCGTGCAGGTCAAGCTGCCTTCGGAAACATGTGTCGTGGTGGTCGTATGTTTGCTCCCACCAGGATCTGGCGCCGATGGCACCGTAAGATCAATGTCAACCAGAAGCGTTACGCTGTTGTTTCAGCCATAGCTGCTTCCGCTGTTCCTTCACTTGTTCTCGCTCGTGGCCACAGGATTGAGGCAGTTCCTGAATTTCCTCTGGTTGTTGGTGATTCCGCTGAAGGAGTTGAGAAAACAAAGGAAGCGATCAAGGTTTTGAAAAAGATCGGAGCTTTTCCTGATGCTGAGAAAGCTAAGGATAGTCACGGAATTCGTCCCGGAAAAGGTAAAATGCGTAATCGTCGATATATCTCTCGTAAGGGACCTTTGATTGTTTACAGTACCGAAGGAGCCAAAGCTGTTAAAGCTTTTAGGAACATTCCTGGTGTTGAGATTGCCAATGTTGAGAGACTTAATCTCTTGAAGCTTGCACCGGGTGGGCATTTAGGTAGATTTGTTGTTTGGACTAAGTCTGCATTTGAGAAACTTGATTCTATTTATGGGTCTTTTGATAAGCCTTCTGAGAAGAAAAAGGGTTATGTTTTACCTAGGGCTAAGATGACTAATTCTGATTTGACTAGGATTATTAATTCTGATGAAGTTCAATCTGTTGTGAGACCTATTAAGAAGGATGTTAAGAGAGCCACTCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGACTTAATCCTTATGCCAAGACTGCTAAAAGGATGGCTTTGCTTGCTGAGGCTCAGCGTCTTAAATCTAAGAAGGAGAAGCTTGATAAGAAGAGGAAGACCGTATCTAAGGAGGAAGCTTCTGCCATTAAGGCAGCAGGAAAAGCATGGTACAACACCATGGTCTCAGATTCTGATTATACCGAATTCGACAACTTCTCCAAGTGGTTGGGTGTTTCACAGTGA 1215 0.4691 MAAARPLVTVQALDSDIATDSPTTLPIPDVMRASIRPDIVNFVHSNISNNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYSTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRAKMTNSDLTRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAQRLKSKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04207 404 Coils Coil 341 371 - -
Vivi4g04207 404 ProSitePatterns Ribosomal protein L1e signature. 119 145 IPR013000 -
Vivi4g04207 404 FunFam 60S ribosomal protein L4 2 307 - -
Vivi4g04207 404 PANTHER 60S RIBOSOMAL PROTEIN L4 3 397 IPR045240 -
Vivi4g04207 404 Gene3D - 2 307 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vivi4g04207 404 SUPERFAMILY Ribosomal protein L4 21 266 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vivi4g04207 404 Pfam Ribosomal protein L4/L1 family 27 265 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vivi4g04207 404 Pfam 60S ribosomal protein L4 C-terminal domain 279 351 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04207 Vivi-Chr4 168060865 168063333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04207 2 404 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.630 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04207 K02930 - gmx:100779764 728.013