Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04203 ATGGCAACTCAAATGAGCAAAAAGCGAAAATTCGTCGCAGACGGAGTTTTTTTCGCTGAATTGAATGAAGTTTTGACCAGAGAGTTGGCCGAGGATGGTTATTCAGGTGTTGAGGTTAGGGTTACCCCGATGCGCACTGAAATCATCATCAGAGCTACTCGTACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGAGAACTAACCTCAGTGGTACAGAAGAGGTTTAAGTTTCCTGAGAACAGTGTGGAACTTTATGCCGAGAAGGTTAACAACAGAGGACTTTGTGCCATTGCTCAGGCCGAGTCTCTTCGTTACAAGCTCCTTGGTGGTCTTGCTGTCCGCAGGGCTTGCTATGGTGTTTTGAGATTCGTCATGGAGAGTGGTGCCAAGGGTTGTGAGGTTATTGTCAGTGGAAAATTAAGAGCCCAAAGAGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATTTCATCTGGACAGCCAGTCAAGGACTACATTGACTCTGCAGTGAGACACGTGCTCCTTAGACAGGGTGTTCTCGGGATCAAGGTAAAGATCATGCTTGATTGGGATCCTAAAGGTAAACAAGGTCCTAAAACTCCCCTCCCTGATATCGTCACCATTCACACTCCAAAGGAAGAGGAAGAGTATGTCCGGCCTGCGGCTGTTGTGGCGAATGATATTGAGGTTCCTGTCCCAGTTCCTGTTGCTTAA 720 0.4722 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYVRPAAVVANDIEVPVPVPVA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04203 239 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Vivi4g04203 239 Gene3D - 93 219 IPR036419 -
Vivi4g04203 239 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Vivi4g04203 239 Pfam KH domain 20 93 IPR004044 GO:0003723
Vivi4g04203 239 CDD KH-II_40S_S3 5 95 - -
Vivi4g04203 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Vivi4g04203 239 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vivi4g04203 239 FunFam 40S ribosomal protein S3 1 92 - -
Vivi4g04203 239 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Vivi4g04203 239 Gene3D - 1 91 IPR015946 -
Vivi4g04203 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Vivi4g04203 239 FunFam 40S ribosomal protein S3 93 228 - -
Vivi4g04203 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04203 Vivi-Chr4 168032848 168035365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04203 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.412 5.37e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04203 K02985 - gmx:100800747 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04203 4 168032848 168035365 Vivi4g04203 4 168032848 168035365 ECH