Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04199 ATGAACTGCTCCATTTCCGGCGAGGTTCCGGAAGAGCCTGTGGTGTCCAAAAGCTCCGGTCTTCTGTTCGAGAAGAGATTAATCGAGAGACACATACAGGATTATGGGAAGTGTCCAGTTACCGGAGAGCCACTTACTCTGGACGACATTGTATCGATCAATACAGGCAAGATAGTGAAGCCCAGACCAGTGCAAGCAGCTAGCATCCCTGGCATGCTCGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAACTTTGCACTGGAGCAACAATTACATACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGCGTGATTGCAAGAATTACTAAAGAACGAGACGAAGCTAGGTCTATACTTGCACAGGCAGAACAACAGTTCCCTATTTCTACACCAAATGCTGCGACAGCGAATGCCCCTGTTCACAGCAATGGGAAAAGAGCTGCTGATGATGAGGAACTGGCACCTAATGCAAAGAAATTACATCCTGGGATATCTTCAAGCATAATTACTGAGCTAACGGACTGCAATGCTGCTCTTTCACAGCAGAGGAAAAAGAGACAGATTCCTGCGACCTTGGCTCCTATTGATGCTCTAGAGACGTATACCCAGATATCGAGTCACCCCTTTCACAAAACTAGCAAACAAGGCATTATATCTCTTGATATCCTTCATTCTAAGGACTTAATTGCAACTGGAGGTTTTGATTCAAATGCTGTTATTTTTGACCGTCCATCAGGACAAATATTGGCTACCCTCAGCGGCCACTCTAAAAAGGTTACCAGTGTGAAGTTTGTAGGTCAGGGAGAATCCGTAATAACTGGTTCAGCAGATAAGACAGTTCGATTGTGGCAAGGATCAGATGATGGTAACTATAACTGCAGACAGATATTGAGGGATCATTCGGATGAGGTTAAAGCCGTCACCGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGACGGCACTTGGTGCTTTTATGAACTGTCTTCAGGCACTTGTCTGACTCAGGTTTCGGACTCTTCTCAAGGCTACACATCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACAGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCCAAGTTTGATGGACATGTGGGGGATGTAACTGCAATATCATTTTCTGAGAATGGATACTACCTTGCGACTGCAGCTCGCGATGGTGTAAAGCTTTGGGATCTACGTAAATTGAAAAATTTCAGGAATTTCGCTCCATATGACGCAGACACTCCAACGAACTCTGTGGAGTTTGACCACAGCGGGTCCTACCTTGCAGTTGCTGGCTCTGATGTAAGGATATACCAAGTTGCAAATGTGAAATCTGAATGGAGCTTGATCAAAACTTTTCCTGATTTATCAGGAACAGGGACATCCACTTGTGTAAAATTTGGTCCAGATTCGAAATACTTGGCAGTTGCATCATTGGATCGGAATCTTCGAATATTTGGCCAACCTGATGAAAGTATTCCTGCGGATTCATAA 1569 0.443 MNCSISGEVPEEPVVSKSSGLLFEKRLIERHIQDYGKCPVTGEPLTLDDIVSINTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARITKERDEARSILAQAEQQFPISTPNAATANAPVHSNGKRAADDEELAPNAKKLHPGISSSIITELTDCNAALSQQRKKRQIPATLAPIDALETYTQISSHPFHKTSKQGIISLDILHSKDLIATGGFDSNAVIFDRPSGQILATLSGHSKKVTSVKFVGQGESVITGSADKTVRLWQGSDDGNYNCRQILRDHSDEVKAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDSSQGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGDVTAISFSENGYYLATAARDGVKLWDLRKLKNFRNFAPYDADTPTNSVEFDHSGSYLAVAGSDVRIYQVANVKSEWSLIKTFPDLSGTGTSTCVKFGPDSKYLAVASLDRNLRIFGQPDESIPADS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04199 522 MobiDBLite consensus disorder prediction 139 161 - -
Vivi4g04199 522 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Vivi4g04199 522 FunFam pre-mRNA-processing factor 19 199 513 - -
Vivi4g04199 522 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Vivi4g04199 522 Pfam WD domain, G-beta repeat 488 511 IPR001680 GO:0005515
Vivi4g04199 522 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Vivi4g04199 522 Pfam WD domain, G-beta repeat 357 381 IPR001680 GO:0005515
Vivi4g04199 522 Pfam WD domain, G-beta repeat 387 421 IPR001680 GO:0005515
Vivi4g04199 522 SUPERFAMILY WD40 repeat-like 221 511 IPR036322 GO:0005515
Vivi4g04199 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Vivi4g04199 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Vivi4g04199 522 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Vivi4g04199 522 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Vivi4g04199 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Vivi4g04199 522 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 513 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Vivi4g04199 522 SUPERFAMILY RING/U-box 1 54 - -
Vivi4g04199 522 CDD WD40 226 511 - -
Vivi4g04199 522 Coils Coil 115 135 - -
Vivi4g04199 522 CDD RING-Ubox_PRP19 1 54 - -
Vivi4g04199 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Vivi4g04199 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Vivi4g04199 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Vivi4g04199 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Vivi4g04199 522 SMART WD40_4 428 464 IPR001680 GO:0005515
Vivi4g04199 522 SMART WD40_4 300 339 IPR001680 GO:0005515
Vivi4g04199 522 SMART WD40_4 471 512 IPR001680 GO:0005515
Vivi4g04199 522 SMART WD40_4 384 422 IPR001680 GO:0005515
Vivi4g04199 522 SMART WD40_4 255 294 IPR001680 GO:0005515
Vivi4g04199 522 SMART WD40_4 210 252 IPR001680 GO:0005515
Vivi4g04199 522 SMART WD40_4 342 381 IPR001680 GO:0005515
Vivi4g04199 522 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Vivi4g04199 522 Gene3D - 202 513 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04199 Vivi-Chr4 167862183 167869976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04199 1 522 U-box Gene Family AT1G04510 73.524 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04199 K10599 - gmx:100527039 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04199 4 167862183 167869976 Vivi4g04199 4 167862183 167869976 ECH