Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04198 ATGGAAAGAAGGGTTCTTGATGGTATCATTAGTAGGTTGCTTGATGTTAGAGGAAGACCTGGGAAACAGGTTCAGCTTTCAGAAGGAGAGATTAAGCAACTTTGCATGGTTTCTAGAGATATCTTCTTGAAGCAGCCTAATCTGTTGGAACTTGAGGCACCAATTAAGATTTGTGGAGATATCCATGGTCAGTATTCAGACCTATTAAGCCTATTTGAGCATGGTGGATTCCCTCCTCGTTCAAACTACTTGTTCTTAGGTGACTATGTAGACCGTGGGAAACAAAGCTTGGAAACAATATGTCTTCTTCTAGCCTACAAAATCAAATATCCAGAAAACTTCTTCCTTCTAAGAGGAAACCACGAATGCGCATCCATTAATCGCGTCTATGGATTTTACGATGAATGTAAAAGGCGATTCAATGTAAGAATATGGAAGACATTTTCAGACTGTTTCAACTGTTTACCTGTCGCGGCTATCGTTGATGATAAGATTATATGTATGCATGGTGGTTTGTCACCTGAACTGCATAGTTTGAAACAGATAAGTAATTTGCCAAGGCCGACTGAAGTTCCTGAAAGCGGTCTTTTATGCGATCTTTTGTGGTCTGATCCTAGTAAAGATGTTCAAGGTTGGGGAGATAACGAACGCGGTGTTTCGTTTACTTTTGGTGCAAGTAAGGTTGCGGAGTTTCTTAATAGGCATGATCTTGATTTGATTTGCAGAGCTCACCAGGTTGTTGAAGATGGTTATGAGTTTTTTGCTAATAGACAACTCGTGACTATTTTTTCGGCTCCGAATTACTGTGGAGAGTTCGACAATGCTGGAGCAATGATGAGTGTTGATGAAACACTCATGTGTTCTTTTCAGATATTAAAACCTGTGGATCATAAAATGCCTAAGTTTGGTTTTAGGAGTGCCACTTCATTCAAGAAGGCATTTCTTGGTGCTAAAGTAAGAGCTGATTGA 969 0.3983 MERRVLDGIISRLLDVRGRPGKQVQLSEGEIKQLCMVSRDIFLKQPNLLELEAPIKICGDIHGQYSDLLSLFEHGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKTFSDCFNCLPVAAIVDDKIICMHGGLSPELHSLKQISNLPRPTEVPESGLLCDLLWSDPSKDVQGWGDNERGVSFTFGASKVAEFLNRHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPVDHKMPKFGFRSATSFKKAFLGAKVRAD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04198 322 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vivi4g04198 322 Gene3D - 13 321 IPR029052 -
Vivi4g04198 322 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vivi4g04198 322 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vivi4g04198 322 SUPERFAMILY Metallo-dependent phosphatases 18 305 IPR029052 -
Vivi4g04198 322 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vivi4g04198 322 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vivi4g04198 322 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vivi4g04198 322 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vivi4g04198 322 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vivi4g04198 322 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vivi4g04198 322 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vivi4g04198 322 CDD MPP_PP1_PPKL 5 294 - -
Vivi4g04198 322 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vivi4g04198 322 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 298 - -
Vivi4g04198 322 FunFam Serine/threonine-protein phosphatase 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04198 Vivi-Chr4 167803008 167806657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04198 33 242 Calmodulin-binding Proteins AT5G63870 30.556 2.83e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04198 K06269 - gmx:100780047 589.341