Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04197 ATGGAAAGAAGGGTTCTTGATGGTATCATTAGTAGGTTGCTTGATGTTAGAGGAAGACCTGGGAAACAGGTTCAGCTTTCAGAAGGAGAGATTAAGCAACTTTGCATGGTTTCTAGAGATATCTTCTTGAAGCAGCCTAATCTGTTGGAACTTGAGGCACCAATTAAGATTTGTGGAGATATCCATGGTCAGTATTCAGACCTATTAAGCCTATTTGAGCATGGTGGATTCCCTCCTCGTTCAAACTACTTGTTCTTAGGTGACTATGTAGACCGTGGGAAACAAAGCTTGGAAACAATATGTCTTCTTCTAGCCTACAAAATCAAATATCCAGAAAACTTCTTCCTTCTAAGAGGAAACCACGAATGCGCATCCATTAATCGCGTCTATGGATTTTACGATGAATGTAAAAGGCGATTCAATGTAAGAATATGGAAGACATTTTCAGACTGTTTCAACTGTTTACCTGTCGCGGCTATCGTTGATGATAAGATTATATGTATGCATGGTGGTTTGTCACCTGAACTGCATAGTTTGAAACAGATAAGTAATTTGCCAAGGCCGACTGAAGTTCCTGAAAGCGGTCTTTTATGCGATCTTTTGTGGTCTGATCCTAGTAAAGATGTTCAAGGTTGGGGAGATAACGAACGCGGTGTTTCGTTTACTTTTGGTGCAAGTAAGGTTGCGGAGTTTCTTAATAGGCATGATCTTGATTTGATTTGCAGAGCTCACCAGGTTGTTGAAGATGGTTATGAGTTTTTTGCTAATAGACAACTCGTGACTATTTTTTCGGCTCCGAATTACTGTGGAGAGTTCGACAATGCTGGAGCAATGATGAGTGTTGATGAAACACTCATGTGTTCTTTTCAGATATTAAAACCTGTGGATCATAAAATGCCTAAGTTTGGTTTTAGGAGTGCCACTTCATTCAAGGCATTTCTTGGTGCTAAAGTAAGAGCTGATTGA 966 0.3986 MERRVLDGIISRLLDVRGRPGKQVQLSEGEIKQLCMVSRDIFLKQPNLLELEAPIKICGDIHGQYSDLLSLFEHGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKTFSDCFNCLPVAAIVDDKIICMHGGLSPELHSLKQISNLPRPTEVPESGLLCDLLWSDPSKDVQGWGDNERGVSFTFGASKVAEFLNRHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPVDHKMPKFGFRSATSFKAFLGAKVRAD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04197 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vivi4g04197 321 Gene3D - 2 303 IPR029052 -
Vivi4g04197 321 SUPERFAMILY Metallo-dependent phosphatases 18 300 IPR029052 -
Vivi4g04197 321 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vivi4g04197 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vivi4g04197 321 CDD MPP_PP1_PPKL 5 294 - -
Vivi4g04197 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 298 - -
Vivi4g04197 321 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vivi4g04197 321 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vivi4g04197 321 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vivi4g04197 321 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vivi4g04197 321 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vivi4g04197 321 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vivi4g04197 321 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vivi4g04197 321 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vivi4g04197 321 FunFam Serine/threonine-protein phosphatase 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04197 Vivi-Chr4 167802994 167806657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04197 33 242 Calmodulin-binding Proteins AT5G63870 30.556 2.67e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04197 K06269 - gmx:100780047 591.267