Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04194 ATGGTTAGAGCACCTTGTTGTGAAAAGAAGGGATTGAAGAAGGGTCCATGGAGCTTAGAGGAAGATGAAATCCTCACATCTTACATCCAAAAACATGGACATAGTAACTGGCGTGCCCTTCCAAAACATGCAGGTTTATTAAGATGTGGTAAGAGTTGTAGATTGAGATGGATTAACTATTTAAGTCCTGATATTAAGAGAGGAAATTTTACAAATGAAGAAGAAGAAATCATTACTCAGATGCATCACTTGCTGGGAAACAGATGGTCAGCAATAGCAGCAAAATTACCTGGTAGAACAGACAATGAAATCAAAAATGTATGGCACACACATTTGAAGAAGAGACTATTGAAAACCAATAATAATCATCACAATTCAAGTACCACAAAAAGTGTATCAAAACCAAAAATTGAAACACCTCATTCTAATTCCAATTTAAGCACTTTAACTCAATCATATGAACCTTCTAATGGTCCTAATTATTTCCTTGAAATTGAAACTACATCATCAAATGGCACTTCTTCTAGTGATTTTTCGTCACAATCACAAGGAAAAAGTATTGACAGTATCATAAATTGTGAAGACCCTGAAGACTCACTAGTGACAATGCTTGAAATTGATGAAAGCTTTTGGTCAGAGACAGTAACTGATGATGAAATTAGTTCCACCATGACATCAAATACTGAATTACCAAATCAACAACACCCTTTTAATAATTCATTGGAAAATTTTCAAAATTCTTTTGATGATGATGATGGCATGGATTTTTGGTATGACTTGTTCATTAGATCAGGGGAATCAACAGAATTGCCAGAGTTCTAA 822 0.3443 MVRAPCCEKKGLKKGPWSLEEDEILTSYIQKHGHSNWRALPKHAGLLRCGKSCRLRWINYLSPDIKRGNFTNEEEEIITQMHHLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLKTNNNHHNSSTTKSVSKPKIETPHSNSNLSTLTQSYEPSNGPNYFLEIETTSSNGTSSSDFSSQSQGKSIDSIINCEDPEDSLVTMLEIDESFWSETVTDDEISSTMTSNTELPNQQHPFNNSLENFQNSFDDDDGMDFWYDLFIRSGESTELPEF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04194 273 CDD SANT 69 112 IPR001005 -
Vivi4g04194 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi4g04194 273 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi4g04194 273 CDD SANT 16 61 IPR001005 -
Vivi4g04194 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi4g04194 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Vivi4g04194 273 FunFam Myb transcription factor 11 67 - -
Vivi4g04194 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi4g04194 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi4g04194 273 SMART sant 13 63 IPR001005 -
Vivi4g04194 273 SMART sant 66 114 IPR001005 -
Vivi4g04194 273 MobiDBLite consensus disorder prediction 121 187 - -
Vivi4g04194 273 MobiDBLite consensus disorder prediction 118 187 - -
Vivi4g04194 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi4g04194 273 Gene3D - 13 66 - -
Vivi4g04194 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi4g04194 273 Gene3D - 69 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04194 Vivi-Chr4 167765479 167767130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04194 1 273 MYB Transcription Factor Family AT2G31180 48.913 2.66e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g04194 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04194 K09422 - gmx:100794205 322.398