Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04188 ATGGCAGATCTTGCTAGTTATGGGATTCCTGAACGTGATATTGAACAAGCATTCCTTACTTTAAAAAGAGGAACTCAGTTAGTTAAGTATAGTAGAAAAGGGAAGCCAAAGCTTTGTAATTTCCGGCTTTCACAGGACGAAACATCACTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTGAACTTGTCTTCTGTTTTGCGCATCATCTCAGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTCTCATTTTCACTTATTTATAAAAAAGGCGAGCGGTCACTTGATCTGATCTGTAAGGATACAGCTGAGGTTGAGATTTGGCTTTCGGGCCTTAAGGCATTAATTTCTACTGGACCGGGTAGAAGGCGGCGCACTAGAAGTGAATTAACAGATGATAGTGATGAATTTTCTCTGAATGGTCGTCCTTTTGGTGGAGCATTAGAGTTTTCTTCAGCTATTTCCAAGAGCAGGTTTTCTTTTGAAACATCTTCTTGTGAATCCACGTCGTATAGAGGAAGATCAGATGTGGGGTCAGATCATGCAAGTATGCCAGTAAGGACGAGTGTTGGAGATGGTTCCCGTGTTAGTGTGTCAGGTGTTAGCTATGTTAGTAGTGTAGGATCAGGAGGACCAGATGACATAGAGTCGCTAGGTGACGTTTTCATATGGGGAGAGGTTTGGGCCGATGGGAATTCCTCTGATGGGTTAGGGAGTCAAGTCCCTTCCAAGACAGATGTCCTGACTCCTAAGTCATTAGAGTCTAATGTTGTTCTTGATGTTCATCTAATAGAACCTGGGGTAAATCACATTGCTCTGGTAACACGGCAAGGAGAGGTTTTTACCTGGGGAGAGGACTCTGGCGGAAGACTTGGGCACGGGTTTGATAAAGATTTTGGTAAACCGAATCTTGTCGAGTCCCTAGCAATTACTAATATGAGTTTAGTTGCATGTGGTGAATATCATACATGTGCGGTATCTACTTCCGGGGATTTATACACCTGGGGTGATGGGGCACATAACGCTGGACTTTTAGGCCATGGAACTGATGTTAGCCATTGTATACCGAAGCGACTCACTGGGATTTTAGAAGGACTTCAGGTTATATCTATAGCATGTGGCTCATGGCATACAGCATTGATAACCGCCAATGGGAAACTTTTTACTTTTGGTGATGGAATGCTTGGTGTATTGGGGCATGGAAATAGAGAGAGCGTGTCGTATCCAAAAGAGGTACAGTTATCTATTGGACATAAGGCTATTCAGGTTGCATGTGGAGTGTGGCACACGGCAGCCATTATAGAGGTCACGGATCAACCGGGTTCATATACTTCTCCATCAAAGAGGATATTCACGTGGGGCGATGGTGATCACTATCGTCTAGGTCATGCTAACAAGGAAACCTGCCTTCAACCGACTTGTGTGGCTGCACTTGCTGAATATAATTTTCACCAGGTTGCTTGTGGGCAAAGTTTGACTGTTGCACTAACCGCATCCGGCCATGTATTTAGTATGGGAAGCACGGCATACGGTCAACTAGGAAATCCAAACTCTGATGGAAAAGTGCCGATTCTAGTAAGAGATAAGTTACAGGGTGAATCTGTTGAGGAAATATCGTGCGGCGCACATCATGTTGCGGTATTAACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGACATGGAGACATAGATGATCAGAAAACTCCAACATTGGTGGAAGCCTTGAAAGAAAGGCATGTGAAGAATATTGCATGTGGCGCAAATTTTACGACTTGTATATGCATACACAAATGGGTTTCTGGGAATGACCAATCGGTTTGCTCCGGTTGCAGACAACCATTCGGTTTTACTAGAAAAAGACATAATTGTTATCATTGTGGGTTGGTGTATTGCCATCCTTGTAGTTCGAAAAAAGCCCTTAAAGCAGCATTGGCTCCAACACCTAGCAAACCCCATCGTGTGTGTGATGCTTGCTATGCTAAGCTTAAAGGTTCTGATAGTGGTAACAGTTCCAGTTATAATCGAGAAATTACTCGTCCTTCTAGTTCCACTTATGGAAGGGAAAGATATGACAGGGGAGAGGTAAGGACTTCAAGTATTCTCTTGTCTTCTGTCACTGGTCTGGCGAAATACTTCGACATAAGGAGTAATGGGCTTGGAAGTGCACTTGATTTGTCTTCCATGGCTAGAGACACTCAAGTTCCGTTGCGTTTACAATTGAAAGATGTCATATTTCCTGGTTCATCAAGTACAACGCAGACTGCTTCGAGGCCTCTTATTGTGCAGCAAAGTAATCCCCCAACCCCACCTTCATTGGTTAATTCAAGACCAACCTCTCCGTATTCAAGAAGACCGCCAAGCCCGACACGTTCTATCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAAGAAGAAAAATGAGCTTTTGAATCAAGAAGTCTCAAAGTTGCAAAACCATATTCGAAGTTTAAAGCAAAAAGGTGACATGAAAGATATGAAGATTCGCGAGCTTCAGAAAAATATTCAAGAAGCCAATCTACTGGCTGGAGAGGAATCTTTTAAGCATAGAGAGGCAAGGGATTTCATCAAGTCCATGACAGATGAGTTGACGGAAGTGACTGAAAAGTTGCCACCAGAGAATCCTGGATGTGAAACCTTGAAAGAGATCAATGCTCAAGCTCAATGTATGCTGAAAGACAACGTAGAATTTGAATCTCCCTTCCAACCGAGCTTTGAGTCTGAGCAACAAAGCGCGCCTGATATATCAGAATCAGATAGCGAATCTTCAAACCTGCAAAGAATCAAAGGAAATGGCGAAGTTTCTGAGGCTGTTCCATCTGTAGATGGAGGAAACGTTCAGCACGAAAGCAACAGCTCATATTTATCTAGTACAGGAGTGTCTCCACCAAGCTCGGAAACTAGTTCCAGATCAGCTGACTCACACAGGATTGTGCAAGAAGGAGAAACATCGGTCATTGAACAATTCGAACACGGTGTTTATATCACAGTCATAGTACTATCTGATGGAAGCAAAATTTTCAAACGTGTTAGATTCAGTAAGCGAAGATACAATGAGCAACAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGTTTAGAAGATACAGTCCACCACAAGAAATTATTGGTTCATCTAGCACCCCACCTCATGGTGAAGGAAATATTGAGACATCACCTTCTTCTTAA 3258 0.4273 MADLASYGIPERDIEQAFLTLKRGTQLVKYSRKGKPKLCNFRLSQDETSLIWISHGKEKNLNLSSVLRIISGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDTAEVEIWLSGLKALISTGPGRRRRTRSELTDDSDEFSLNGRPFGGALEFSSAISKSRFSFETSSCESTSYRGRSDVGSDHASMPVRTSVGDGSRVSVSGVSYVSSVGSGGPDDIESLGDVFIWGEVWADGNSSDGLGSQVPSKTDVLTPKSLESNVVLDVHLIEPGVNHIALVTRQGEVFTWGEDSGGRLGHGFDKDFGKPNLVESLAITNMSLVACGEYHTCAVSTSGDLYTWGDGAHNAGLLGHGTDVSHCIPKRLTGILEGLQVISIACGSWHTALITANGKLFTFGDGMLGVLGHGNRESVSYPKEVQLSIGHKAIQVACGVWHTAAIIEVTDQPGSYTSPSKRIFTWGDGDHYRLGHANKETCLQPTCVAALAEYNFHQVACGQSLTVALTASGHVFSMGSTAYGQLGNPNSDGKVPILVRDKLQGESVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDIDDQKTPTLVEALKERHVKNIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDACYAKLKGSDSGNSSSYNREITRPSSSTYGRERYDRGEVRTSSILLSSVTGLAKYFDIRSNGLGSALDLSSMARDTQVPLRLQLKDVIFPGSSSTTQTASRPLIVQQSNPPTPPSLVNSRPTSPYSRRPPSPTRSISPGFSRSLIDNLKKKNELLNQEVSKLQNHIRSLKQKGDMKDMKIRELQKNIQEANLLAGEESFKHREARDFIKSMTDELTEVTEKLPPENPGCETLKEINAQAQCMLKDNVEFESPFQPSFESEQQSAPDISESDSESSNLQRIKGNGEVSEAVPSVDGGNVQHESNSSYLSSTGVSPPSSETSSRSADSHRIVQEGETSVIEQFEHGVYITVIVLSDGSKIFKRVRFSKRRYNEQQAEEWWNKNKDRVFRRYSPPQEIIGSSSTPPHGEGNIETSPSS 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04188 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Vivi4g04188 1085 Gene3D - 446 623 IPR009091 -
Vivi4g04188 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 378 388 IPR000408 -
Vivi4g04188 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 761 811 - -
Vivi4g04188 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Vivi4g04188 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 679 703 - -
Vivi4g04188 1085 SUPERFAMILY FYVE/PHD zinc finger 611 679 IPR011011 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 679 698 - -
Vivi4g04188 1085 Pfam FYVE zinc finger 611 676 IPR000306 GO:0046872
Vivi4g04188 1085 ProSiteProfiles BRX domain profile. 1005 1060 IPR013591 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 966 996 - -
Vivi4g04188 1085 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 879 - -
Vivi4g04188 1085 SUPERFAMILY RCC1/BLIP-II 226 612 IPR009091 -
Vivi4g04188 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Vivi4g04188 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Vivi4g04188 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 336 388 IPR000408 -
Vivi4g04188 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 560 607 IPR000408 -
Vivi4g04188 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 456 503 IPR000408 -
Vivi4g04188 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Vivi4g04188 1085 Gene3D - 171 347 IPR009091 -
Vivi4g04188 1085 Gene3D - 348 445 IPR009091 -
Vivi4g04188 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 682 IPR013083 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 922 999 - -
Vivi4g04188 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Vivi4g04188 1085 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vivi4g04188 1085 FunFam PH, RCC1 and FYVE domains-containing protein 1 196 445 - -
Vivi4g04188 1085 SMART fyve_4 609 678 IPR000306 GO:0046872
Vivi4g04188 1085 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Vivi4g04188 1085 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Vivi4g04188 1085 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Vivi4g04188 1085 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Vivi4g04188 1085 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Vivi4g04188 1085 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 175 200 - -
Vivi4g04188 1085 CDD PH_PLC_plant-like 12 124 - -
Vivi4g04188 1085 Coils Coil 815 842 - -
Vivi4g04188 1085 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 1058 1085 - -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 922 952 - -
Vivi4g04188 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Vivi4g04188 1085 Gene3D - 13 127 IPR011993 -
Vivi4g04188 1085 MobiDBLite consensus disorder prediction 1063 1085 - -
Vivi4g04188 1085 SUPERFAMILY PH domain-like 14 123 - -
Vivi4g04188 1085 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1059 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04188 Vivi-Chr4 167700713 167706715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04188 959 1060 Major Intrinsic Protein MIP AT1G31880 31.731 3.12e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04188 - - mtr:11430388 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04188 4 167700713 167706715 Vivi4g04188 4 167700713 167706715 ECH