Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04179 ATGGAAGCTACGAGGCGTTGGTTTAGTAAGTTCAGGTCGAAAAATAAGGAAGCTACAAGCAAGGCGAAAGAAGGGTCGAAACCACCGATCAATGAAGATCCGCCTTCGAATGCAACCCAACAGAGGGTTGAAGCTGCAAAGCATTACATAGAGAATCATTATAAGAAGCAGATGCAAAGTCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAATTGGCTGATGCTGAAGTCACCGAGGAAGAGCAGAACAATTTGCTCAAGTATTTGGAGAAAAAGGAGACAGAGATCATGCGCCTTCAGAGACATAAGATGGGTGCTGATGACTTTGAGCCTATGACTATGATTGGGAAGGGGGCGTTTGGAGAGGTTAGAGTCTGCCGGGAGAAGTCAACTGGGCATGTATATGCAATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGACAGGTTGAACATGTCAAAGCCGAGAGGAACCTTCTTGCAGAAGTTGACAGCAATTGCATTGTAAAACTTTATTGTTCTTTTCAAGATGACGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACGTTGCTAATGCGGAAAGATATACTGACTGAAGATGAAGCTAGGTTCTATATCGGGGAGACTGTGCTAGCCATAGAGTCTATTCATAAACATAACTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTGGATAGAAGCGGTCACATGAAGTTATCAGATTTTGGATTATGTAAGCCGCTCGACTGCACTAACCTTCAAGAAAAAGACTTATCTGTTGGAATTAGTAGAAGTGGAGCGCTTCAAAGCGACGGGCGTCCTTTGGCTCCTAAACGATCACAACAGGAGCAGCTACAGCATTGGCAGAAAAATCGCAGAATGTTGGCCTATTCTACGGTTGGAACGCCTGATTATATTGCTCCAGAAGTCCTGTTGAAGAGAGGATATGGAGTCGAATGTGATTGGTGGTCTCTAGGAGCCATAATGTATGAAATGCTTGTGGGGTATCCGCCATTTTATTCGGATGAACCAATGGCAACTTGTAGAAAGATTGTAAATTGGAGGACAACTTTAAAATTTCCAGAAGAAGCTAAACTATCACCAGAGGCAAAGGATCTTATTTGCAGACTCCTATGTAATGTGGAGCAGAGGCTAGGAGTCAAAGGAGCTGATGAAATAAAGGCTCACGCATGGTTCAAAGGCGTTGAATGGGACAGGTTGTACCAAATGGAAGCTGCTTTTATGCCCGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAATTCGAAGAGGCGGACAAGCAAACTGAACCTTCCTCAAAGGCAGGGCCATGGAGAAAGATGCTTCCATCTAAAGATATTAACTTTGTTGGTTACACATACAAGAATTTAGAAATTGTTGGTGAAAGTGTAATACCTGGAATTGCTGAATTGAAGAAGAAAACAAAACCGAAAAGGCCATCTATTAAGTCCTTATTTGATGATGAATCAGCTAAGGCTTGTTGTAATCAACCTGTTAGAGGGAGCTTCTTAAATCTGCTACCTCCTCAGATGGAAGTTCCAGAGAAAAATGAATCACAATGA 1623 0.4184 MEATRRWFSKFRSKNKEATSKAKEGSKPPINEDPPSNATQQRVEAAKHYIENHYKKQMQSLQERKERRNMLEKKLADAEVTEEEQNNLLKYLEKKETEIMRLQRHKMGADDFEPMTMIGKGAFGEVRVCREKSTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYIGETVLAIESIHKHNYIHRDIKPDNLLLDRSGHMKLSDFGLCKPLDCTNLQEKDLSVGISRSGALQSDGRPLAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKRGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMATCRKIVNWRTTLKFPEEAKLSPEAKDLICRLLCNVEQRLGVKGADEIKAHAWFKGVEWDRLYQMEAAFMPEVNDELDTQNFEKFEEADKQTEPSSKAGPWRKMLPSKDINFVGYTYKNLEIVGESVIPGIAELKKKTKPKRPSIKSLFDDESAKACCNQPVRGSFLNLLPPQMEVPEKNESQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04179 540 CDD STKc_NDR_like 110 475 - -
Vivi4g04179 540 Gene3D Transferase(Phosphotransferase) domain 1 310 429 - -
Vivi4g04179 540 Pfam Protein kinase domain 114 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04179 540 FunFam Non-specific serine/threonine protein kinase 83 195 - -
Vivi4g04179 540 MobiDBLite consensus disorder prediction 1 28 - -
Vivi4g04179 540 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Vivi4g04179 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Vivi4g04179 540 Gene3D Phosphorylase Kinase; domain 1 110 195 - -
Vivi4g04179 540 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi4g04179 540 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi4g04179 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 454 - -
Vivi4g04179 540 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Vivi4g04179 540 FunFam Non-specific serine/threonine protein kinase 196 263 - -
Vivi4g04179 540 SUPERFAMILY Protein kinase-like (PK-like) 87 458 IPR011009 -
Vivi4g04179 540 ProSiteProfiles Protein kinase domain profile. 112 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04179 540 MobiDBLite consensus disorder prediction 1 42 - -
Vivi4g04179 540 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Vivi4g04179 540 SMART serkin_6 112 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04179 540 Gene3D Transferase(Phosphotransferase) domain 1 196 261 - -
Vivi4g04179 540 Coils Coil 54 95 - -
Vivi4g04179 540 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vivi4g04179 540 CDD MobB_NDR_LATS-like 46 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04179 Vivi-Chr4 167618730 167624360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04179 17 534 AGC Kinase Gene Family AT4G14350 81.503 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vivi4g04179 Pkinase 6.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04179 K08790 - gmx:100795087 998.808