Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04178 ATGATGGATCTTGTTATCGGTGGAAAATTCAAACTTGGGAGGAAAATTGGGAGTGGATCATTTGGAGAGCTTTATTTGGGTGTTAATTTGCAAACTCAAGAGGAAGTGGCTGTTAAGCTGGAACCTGTGAAGACAAAACATCCTCAACTTCTCTATGAATCCAAATTGTATATGCTTCTTCAAGGAGGAACTGGCATACCTCATATAAAATGGTCTGGAGTCGAGGGAGACTACAATGTCATGGCTATTGACCTTCTTGGACCAAGTCTCGAAGACTTGTTTAACTATTGCAGTAGAAAATTCTCTCTGAAAACAGTGTTGATGCTTGCAGATCAACTAATAAACAGAGTTGAGTATATGCACTCTCGGGGCTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGGTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTATGGCCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAAGGAAAACAAGAACCTCACTGGAACTGCTCGATATGCAAGTGTTAATACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTTTTGTGCAAGTTACATCCAACAGAATTCACATCTTATTTCCATTATTGTCGATCATTGCGGTTTGAAGATAAACCAGATTATTCATATCTTAAGAGGCTCTTTCGGGACCTATTCATTAGAGAAGGTTATCAATTTGACTATGTATTTGATTGGACTATATTGAAGTATCCCCAAGCCGGATCCAGCTCTAGAACACGGCCGAGTGTGAAACCAGCCGCCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAGATTCGAGATAGATTATCTGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGTTCTGGGCATGGACTGCATAAGGATCTTTCCAAGCATAGGTCTTTAGATAATATGCCATCTCCCAAAGATGTGCAACCTGATTCTGACAGGGCTCGCAGTTCTACTCGTAATGGAAGTTCTTCAAAAAGGCCTATGATATCTAACAGCAGACCAAGCTCTTCCGGGGAGCCTAGTGAAGGTCGATCTAGCCGACTGGTCTCTAGCAGTAGTCGTCTATCTTCTACTCAGAGGGTTCAACCAGGTTTTGAATCCAAATCATCCTTCACCCGTGCCGCCACCGCAGGGACACGAGGTAGCCGCGATGATACACTCAAGAGCTTTGAGCTCCTGTCAATTGGTACAGGTAAAAGGAAATGA 1401 0.4233 MMDLVIGGKFKLGRKIGSGSFGELYLGVNLQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGDYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYKENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKLHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQAGSSSRTRPSVKPAALNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSGHGLHKDLSKHRSLDNMPSPKDVQPDSDRARSSTRNGSSSKRPMISNSRPSSSGEPSEGRSSRLVSSSSRLSSTQRVQPGFESKSSFTRAATAGTRGSRDDTLKSFELLSIGTGKRK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04178 466 MobiDBLite consensus disorder prediction 379 448 - -
Vivi4g04178 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vivi4g04178 466 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04178 466 Gene3D Transferase(Phosphotransferase) domain 1 1 321 - -
Vivi4g04178 466 PANTHER CASEIN KINASE-RELATED 14 405 - -
Vivi4g04178 466 FunFam Casein kinase 1-like protein 2 331 - -
Vivi4g04178 466 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04178 466 FunFam Putative Casein kinase I 2 86 - -
Vivi4g04178 466 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Vivi4g04178 466 MobiDBLite consensus disorder prediction 349 378 - -
Vivi4g04178 466 MobiDBLite consensus disorder prediction 299 329 - -
Vivi4g04178 466 SMART serkin_6 10 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04178 466 MobiDBLite consensus disorder prediction 341 452 - -
Vivi4g04178 466 CDD STKc_CK1_delta_epsilon 9 283 - -
Vivi4g04178 466 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04178 Vivi-Chr4 167610309 167619058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04178 9 214 MAP Kinase Kinase Kinase AT3G06030 27.315 1.06e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vivi4g04178 Pkinase 1.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04178 K08960 - cave:132177205 792.341