Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04139 ATGCCTCTTAGGCAAATGAAAGAGAGTTCAGAACAGCACCTTGTAATCAAACCTCATCTGCCAAACACTATGAATCAAACTAAGAAGGTTACTAAAGCTGTTCAAAATGGTAAAGGTCCACCATTGTTGGCACAAGAGCAACATAACCAAACTTCACCACCACCTCAAGGAAGGAGTGGTGGTGGAAGGAGAAGGAGTAGAAATGGACGAAAATCTGATCAAGTTGATGTTTTGATGAGACCAAGTTGTAGACCTTGTACTGCTGTGAAAAGTAATGAAAATGGTCATGTTGTTCAAAATGGAAACGTAGTTTCTAGTGATGTAGAGATGAGTTTTCCTACTTCAAGCAAGTCTTTGAGTTTTGCTCAAAGGCCAGGTTATGGACAAGTTGGTACAAAATGCATTGTTAAAGCTAACCACTTCTTTGCAGAATTACCAGACAAGGACTTGAATCAGTATGATGTAACTATTACACCGGAAGTGTCTTCCAAAGCAGTTAACAGATCCATTATAGCAGAACTTGTGAGGCTGTATAAAGAATCTGACCTTGGCATGAGGCTTCCAGCATATGATGGCAGGAAAAGTCTGTACACAGCAGGAGTTCTTCCATTTTCCTGGAGAGAGTTTAAGATTAAGCTTATAGAAGAAGAGGATGGAATTAATGGCCCCAAGAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCAAGGGCTAACTTGCATCACTTGGGACAGTTTCTGGCTGGAAAGCGTGCAGATGCTCCACAGGAGGCAATACAAATTCTAGACATTGTACTAAGAGAGCTAGCATCCAAGAGGTTTTGTCCCATTGGGAGGTCGTTTTATTCACCTGATATTAGAACACCACAACGACTCGGAGAAGGATTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGACCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCTTCTGCCGCGTTCATTGAACCTCTTCCGGTGGTGGAATTTGTTGGCCAGCTATTAGGTAAAGATGTTCTGTCAAGGCAGTTGTCTGATGCAGATCGCATTAAGATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTGACGCATAGAGGGAGTGTTAGACGAAAGTATCGTGTTTCTGGTATAACTTCTCAACCAACAAGAGAACTTGTGTTTCCCGTTGATGAGAACTCAACTATGAAATCAGTGGTTGAATACTTCCAGGAGATGTACGGTTTCACTATTAAACATACACACCTTCCTTGCCTTCAAGTTGGTGGAAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATCGTCGAGGGACAACGATATACTAAAAGGTTGAATGAAAAGCAAATTACCTCACTACTGAAAGTGACATGCCAGAGACCCCGTGATCGAGAAAATGATATTTTGCGGACAGTTCAGCATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAGTCAGTGAGAAGCTAGCGTCAGTAGAAGCACGAATTCTTCCCGCTCCTTGGCTTAAATATCACGAGAGTGGCAAAGAAAAAAATTGTTTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACGGTTAGCCGCTGGGCATGCATAAATTTTTCACGAAGTGTGCAAGATAGTGTGGCTCGTACATTTTGTAACGAGCTTGCGCAAATGTGTCAAGTATCTGGCATGGAATTTAATCTAGACCCTGTTATTCCGATCTACAATGCAAAACCTGAGCAAGTGGAGAAAGCTTTGAAGCATGTTTACCATGTATCATCAAACAAAACCAAAGGAAAAGAGTTGGAGCTTTTGTTAGTAATATTGCCCGACAACAATGGTTCTCTCTACGGTGATCTCAAGCGTATATGTGAGACTGACCTTGGTTTAATTTCTCAATGTTGTTTAACAAAGCATGTCTTCAAGATCACGAAGCAGTACTTGGCTAATGTGTCTCTGAAAATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTGTTGATGCCGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCAACAATAATATTTGGAGCAGATGTTACACACCCTGAAAACGGGGAAGACTCCAGCCCCTCAATAGCAGCTGTAGTAGCGTCACAAGATTGGCCTGAAGTTACAAAGTATGCAGGTTTAGTTTGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGATCCTGTTCGTGGCGTTGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAGGGCGACAGGACAGAAGCCACAGCGGATCATATTTTATAGGGATGGTGTAAGCGAAGGACAGTTTTACCAAGTTCTACTATACGAGTTGGATGCGATTCGGAAGGCGTGTGCTTCTTTGGAGCCAAACTATCAACCTCCGGTAACTTTTATAGTTGTACAAAAAAGACATCATACTCGGTTATTCGCAAACAACCACAGGGACAGGAACAGTACAGATAGGAGTGGAAATATACTGCCTGGAACTGTTGTTGATACAAAAATCTGTCACCCGACCGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGTCGTCCTGCGCATTATCACGTTCTATGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTACACATATGCTAGATGTACACGCTCCGTATCTGTTGTCCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCACGTTTCTACACGGAGCCAGACCTACAGGAAACTGGCTCCACCACGGGTGGTCGTGGTTCGAAGACAACACGGGCAGCAGGAGATTGCGGTGTCAAGCCATTGCCAGCCTTGAAGGAAAATGTGAAGAGAGTGATGTTTTACTGTTAA 2949 0.4222 MPLRQMKESSEQHLVIKPHLPNTMNQTKKVTKAVQNGKGPPLLAQEQHNQTSPPPQGRSGGGRRRSRNGRKSDQVDVLMRPSCRPCTAVKSNENGHVVQNGNVVSSDVEMSFPTSSKSLSFAQRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNLDPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSTTGGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04139 982 ProSiteProfiles PAZ domain profile. 329 444 IPR003100 GO:0005515
Vivi4g04139 982 Gene3D - 508 681 - -
Vivi4g04139 982 MobiDBLite consensus disorder prediction 20 77 - -
Vivi4g04139 982 Gene3D - 687 982 IPR036397 GO:0003676
Vivi4g04139 982 CDD PAZ_argonaute_like 328 443 - -
Vivi4g04139 982 FunFam Argonaute 10 508 681 - -
Vivi4g04139 982 SUPERFAMILY PAZ domain 323 484 IPR036085 GO:0005515
Vivi4g04139 982 CDD Piwi_ago-like 488 938 IPR045246 -
Vivi4g04139 982 Pfam Argonaute linker 2 domain 470 516 IPR032472 -
Vivi4g04139 982 Pfam PAZ domain 352 460 IPR003100 GO:0005515
Vivi4g04139 982 Gene3D paz domain 322 448 - -
Vivi4g04139 982 Pfam Piwi domain 619 937 IPR003165 GO:0003676
Vivi4g04139 982 SMART DUF1785_2 276 328 IPR014811 -
Vivi4g04139 982 FunFam protein argonaute 10-like 687 982 - -
Vivi4g04139 982 SUPERFAMILY Ribonuclease H-like 610 939 IPR012337 -
Vivi4g04139 982 ProSiteProfiles Piwi domain profile. 618 939 IPR003165 GO:0003676
Vivi4g04139 982 SMART PAZ_2_a_3 333 466 IPR003100 GO:0005515
Vivi4g04139 982 MobiDBLite consensus disorder prediction 42 57 - -
Vivi4g04139 982 FunFam Protein argonaute-2 322 449 - -
Vivi4g04139 982 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 113 938 - -
Vivi4g04139 982 Pfam Argonaute linker 1 domain 277 326 IPR014811 -
Vivi4g04139 982 SMART Piwi_a_2 618 939 IPR003165 GO:0003676
Vivi4g04139 982 Pfam N-terminal domain of argonaute 133 267 IPR032474 -
Vivi4g04139 982 Pfam Mid domain of argonaute 527 604 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04139 Vivi-Chr4 166800848 166808697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04139 1 982 Eukaryotic Initiation Factors Gene Family AT5G43810 81.552 0.0 1654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04139 K11593 - gmx:100816999 1771.52