Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04129 ATGGTTGGATTGGAACTCATACCGATAGGTACAATTTTGGCTGTTCTAACCAGCCAGGTTGTGAGAACAGCTAGTGCTGCAAAAGATGTTCTTATCGACAAAGAAAGTTTTAATGTCCTTTCGAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTAAAACAAGCAAGTAACTTGGTCGAGAAGTACAGGAACAGCGGCCGCTTTTACTTACTTATGAAGTGTCGTTCCATAGTCAAGGAAGTTGAACAAGTCATTAGGGATATAGGAAGGTCTCTAGCTGCATTGTCTCTTGCAAATACTGAAGTCCTATCTAGAATTTCCGATCAAGTCAACAAACTACAGAGTGAGATGCAAAGGGCCGAGTTTGAGGCTTCGCAATCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAACTAGATCAGGCTTTTGCAAACAATATGCTCGAAGAGATAGCGAGGGCAGTCGGGGTGCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGATGGGAAAAAGAAGAAGCTGCAAACCGGAAAGAAAGAGCCGAAGTTATATTTTTGGAGCAGATCATTTTACTACTCTCTCAAGCTGATGCAGCAAGTGATTACGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAATAGAGCGATATGGTTCAAGGGAAAAATATATTCCACCACTTAATTCTTTTCTTTGTTCTATAACTGAAGCTGTTATGGTAGATCCTGTTAGTCTTTGCACCGGTACTACATGTGAGAGATCTGCCATCGAAGCTTGGTTTGATGATTGCAATATGATTGACCCAAAAACAAAAGAGGTTCTTGAAGATACAACTTTAAGGTCGAACATTCGGTTAAGACAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTTAGAATAAAGTCTATCAGGGAAAACTTATTATCTAATTTTGGCTTATTATTGCATGAGTCCTTGAGTCAGATGCAGGCTCTCATAAGAGAGAACCCAATTAATAAGGATTGGATTTCTATAGGAGGGCTTACTGATATTATTATCTCCATCCTTGGGAATTCTGATTCTATAGATGTCAAGATGAATATCTTGATTACTTTGAAGGATGCTGTTGAAGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGGGTCACATTATTTCCTGCTTACACAATGACTCTAGAGTAATAAAGGAAGCAATTGATTTGCTCTATGAGTTGCTTCAAGACCGTTCTGGTTGGAATAGAAGTTTCTGCAAAAAAATTTCTGAGCATCCCAGCATAGTTCATTACCTTGTTACCATTCTAAGGGGACCTGTCAGCGATTCAACTGGGATTGCAGAAAAGATTTTGACGAAGCTTTTTGAAATAGATGAGGAAAACATTTCATGTGCTGCTAAGTTTGGCTGGTACAAAGCACTTGTTGATCGCATGATTCAAGGATCGGAGTCTTCAAGAATGTCAATGGCTAAAGCTATAATCAATTTCAATTTGGAAGAATCAAATTTAAAACTCCTTGGCGAGAAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCTGGAAGCATTGAGTTGAAAGAATTATCATTATCAGCATTGGTCAAACTAGCAGGAGTTCATGCCAATAAAGGAATTATTGCTGCATATGGAGGTGTCCCCATTCTTCTAGATTTAATGTTCTCCCTTCGGACACGGGCGTTCATTAGCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCTTCTTCTTCTGATGGAATTGGTTTCTTTATTGACGGAGAAGGGAAACAACTCGAGTTAGACACCATTATCACCAATTTGCTAGCTCTGCAGCAGCTTCCTAACTCAGCTCAGTACTTCCGTAAGCCTGCATTGCGTGCTCTTCTCGGAATTTGCAAGTTTGAGACAGGTTTAGTTAAGAAGGCAGTTCTGGCAGCGCACGGTGTATCACTAATTCTTCCCCTTCTTGATGACTCTGACTCAGAAATCAGGGAAACTGCCATTAGTCTTCTCTTTCTTTTCTCGCAACATGAACCAGAAGGAGTGGTTGAATACCTCTTTAGGCCTAGAAGACTTGAAGCTTTAGTCGGCTTTCTTGAGAATGATGAAAATAATGATGTACAAGTAGCTGCTACTGGTTTACTAGCTAACCTTCCTAAATCCGAACGAAAACTCACTATGCAATTAATTGACTTAGGTGGCCTAGATGCAATTATAAACATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTTAGGTTCACAGATCCCACAGATATCAATTCACAGCGCGATTTGGTTAGACGGGGAATATATCCTTTGTTAGTAAAATTTCTCAATACTGGTTCAGTGACAGCAAAGGCAAGAGCAGCAGCATTCATTGGCGATCTTTCCATGAGCACTCCAAAGCTCACAGTTGTTTCAAAATCAACATTTTGCAGGTGTTTTCGACCATCACGAGCTCCTTTATGCTCGGCACACGGAAGTGTTTGCAATGTGAATTCCACATTTTGTCTTTTGGAAGCAAATGCTCTGCCTGGCTTGATTAAGCTGTTACAAGAGGAGGTTCATGCAACTGCTTACGAAGCTATACAGACACTTTCCACATTGGTTATAGAAGATTTTCCTCAAAGAGGAGCTCGTGTTTTGCACGAGTCGAATGCAATGAGACCGCTATTGAAAATTTTAAACTGGGGAAGTGATTCTCTTAAGGCAGAAGTTCTTGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGATCAACGGCTAGATTACGTCTATTCCATCTTACTGGCATGAATGTATATGGGGACGGCCACCTGAGGAGAAAAGCTGCCAGGGTACTGTCATTGCTGGAACGCTCTTCGAGATCGTCATCACATTCAGTCAGTGGAGTTGTGTTGAGTGAGAATCTACGCCTATGA 3069 0.4053 MVGLELIPIGTILAVLTSQVVRTASAAKDVLIDKESFNVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKQASNLVEKYRNSGRFYLLMKCRSIVKEVEQVIRDIGRSLAALSLANTEVLSRISDQVNKLQSEMQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANNMLEEIARAVGVPVEPSEISKEIASIRWEKEEAANRKERAEVIFLEQIILLLSQADAASDYEEVKKQYFQRVQVIERYGSREKYIPPLNSFLCSITEAVMVDPVSLCTGTTCERSAIEAWFDDCNMIDPKTKEVLEDTTLRSNIRLRQSIVEWRELNYCFRIKSIRENLLSNFGLLLHESLSQMQALIRENPINKDWISIGGLTDIIISILGNSDSIDVKMNILITLKDAVEGHARNKEKVVESQGWGHIISCLHNDSRVIKEAIDLLYELLQDRSGWNRSFCKKISEHPSIVHYLVTILRGPVSDSTGIAEKILTKLFEIDEENISCAAKFGWYKALVDRMIQGSESSRMSMAKAIINFNLEESNLKLLGEKGVIPPLLEMLSGSIELKELSLSALVKLAGVHANKGIIAAYGGVPILLDLMFSLRTRAFISIKCFEILEKLSSSSDGIGFFIDGEGKQLELDTIITNLLALQQLPNSAQYFRKPALRALLGICKFETGLVKKAVLAAHGVSLILPLLDDSDSEIRETAISLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDENNDVQVAATGLLANLPKSERKLTMQLIDLGGLDAIINILKNGTMEAKENALSALFRFTDPTDINSQRDLVRRGIYPLLVKFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSTFCRCFRPSRAPLCSAHGSVCNVNSTFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVIEDFPQRGARVLHESNAMRPLLKILNWGSDSLKAEVLGLLEKVFVSKEMVEYYGSTARLRLFHLTGMNVYGDGHLRRKAARVLSLLERSSRSSSHSVSGVVLSENLRL 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04129 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 336 IPR013083 -
Vivi4g04129 1022 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Vivi4g04129 1022 Gene3D - 539 849 IPR011989 -
Vivi4g04129 1022 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1008 - -
Vivi4g04129 1022 Coils Coil 127 154 - -
Vivi4g04129 1022 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vivi4g04129 1022 SMART arm_5 673 713 IPR000225 GO:0005515
Vivi4g04129 1022 SMART arm_5 875 915 IPR000225 GO:0005515
Vivi4g04129 1022 SMART arm_5 919 959 IPR000225 GO:0005515
Vivi4g04129 1022 SMART arm_5 801 842 IPR000225 GO:0005515
Vivi4g04129 1022 SMART arm_5 715 757 IPR000225 GO:0005515
Vivi4g04129 1022 SMART arm_5 408 447 IPR000225 GO:0005515
Vivi4g04129 1022 SMART arm_5 537 576 IPR000225 GO:0005515
Vivi4g04129 1022 SMART arm_5 758 799 IPR000225 GO:0005515
Vivi4g04129 1022 Coils Coil 62 89 - -
Vivi4g04129 1022 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vivi4g04129 1022 SUPERFAMILY ARM repeat 359 714 IPR016024 -
Vivi4g04129 1022 CDD RING-Ubox_PUB 265 314 IPR045210 -
Vivi4g04129 1022 Gene3D - 9 123 IPR036537 GO:0007166
Vivi4g04129 1022 CDD MLKL_NTD 10 142 - -
Vivi4g04129 1022 SUPERFAMILY RING/U-box 247 331 - -
Vivi4g04129 1022 Gene3D - 859 1013 IPR011989 -
Vivi4g04129 1022 Gene3D - 337 538 IPR011989 -
Vivi4g04129 1022 SUPERFAMILY ARM repeat 647 1000 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04129 Vivi-Chr4 166573307 166578144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04129 264 973 U-box Gene Family AT1G20780 25.955 1.81e-35 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04129 - - gsj:114377374 1588.16