Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04126 ATGGAACGGCGGCAACAGTCACCACCCCCGTCTCCGCCGTCACGAGTCATACTCGGAAAATACCAGCTTACCAAATTCCTCGGACGCGGAAACTTCGCGAAGGTTTACCAAGCAACTTCTCTGATCGACGGTTCAACAGTCGCCGTGAAGGTGATTGACAAATCCAAAACGGTGGACGCGTCCATGGAGCCACGAATCGTTCGTGAAATCGATGCCATGCGCCGTCTTCAAAACCATCAGAACATCCTCAAAATTCATGAAGTTTTAGCCACGAAAACTAAGATCTATCTCATCGTCGATTTCGCCGGCGGCGGTGAGCTTTTCTACAAACTCTCACGGCGAGGTAGGTTTACGGAGTCCGTCGCTCGTCGGTACTTTCAACAGCTTGTCTCCGCTCTCTGTTTCTGTCACAAAAACGGCGTCGCTCACCGTGACCTAAAGCCGCAGAATCTCCTCCTCGACGCTGACGGTAATCTCAAGGTCTCCGACTTTGGTCTCTCCGCGTTACCGGAACAGCTTCAAAACGGTCTCCTTCATACAGCCTGTGGTACTCCGGCGTACACCGCACCGGAGATTCTCGGCCGGATCGGGTACGACGGATCTAAAGCAGACGCTTGGTCCTGCGGCGTCATCCTATATGTACTTCTCGCCGGTCATCTCCCGTTCGACGATTCAAATATTCCGGCGATGTGTAAGAAAATCATGCGGCGGGATTTTCAGTTTCCGGCGTGGTTTTCGAAGCCAGCGCGGTACCTAATCTATCAGCTACTCGACCCGAACCCTAAAACCCGAATCAAACTAGAGAACGTGTTCGGAAACGCATGGTTTAAGAAATCGTTAAGAGAAGAACCTGAAGTTAAAGTTTTTGAACCAGAATTATACAATAAATACTGTTGTGAAGGTAACAAGAAACTAGAATTGGGGATGAATGCTTTCGATATAATATCGATGTCTTCGGGTTTGGATTTGAGTGGTTTGTTCGAAACTACGTCGTTTAGAACTGAAAAGAGGTTTACTTCAAGTGAAGAAATTGGTGTGGTGGAAGAGAAAGTGAAGGAAATTGGAGGGGGATTAGGGTTTAGGATTGAGATTGGGAAAAATGGAACAATTGGATTGGGGAAAGGGAAGGTTACTATGGTGGTTGAGGTGTTTAAGATAGTGGACAATTTGTTGTTGGTAGCATTAAAACTGGAGAATGGTGGAATGGAATTTGAAGATCTTCATTGGAATGATTGGAAAAATGGGCTTCAAGATGTTGTTATGTCATGGCATAATCATGAATCAAAATTTCCATGTAATAATGTTGATGAATCTGAAAGAAGGATTACTTAG 1332 0.461 MERRQQSPPPSPPSRVILGKYQLTKFLGRGNFAKVYQATSLIDGSTVAVKVIDKSKTVDASMEPRIVREIDAMRRLQNHQNILKIHEVLATKTKIYLIVDFAGGGELFYKLSRRGRFTESVARRYFQQLVSALCFCHKNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEQLQNGLLHTACGTPAYTAPEILGRIGYDGSKADAWSCGVILYVLLAGHLPFDDSNIPAMCKKIMRRDFQFPAWFSKPARYLIYQLLDPNPKTRIKLENVFGNAWFKKSLREEPEVKVFEPELYNKYCCEGNKKLELGMNAFDIISMSSGLDLSGLFETTSFRTEKRFTSSEEIGVVEEKVKEIGGGLGFRIEIGKNGTIGLGKGKVTMVVEVFKIVDNLLLVALKLENGGMEFEDLHWNDWKNGLQDVVMSWHNHESKFPCNNVDESERRIT 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04126 443 FunFam Non-specific serine/threonine protein kinase 14 106 - -
Vivi4g04126 443 CDD CIPK_C 310 417 - -
Vivi4g04126 443 Pfam NAF domain 309 363 IPR004041 GO:0007165
Vivi4g04126 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 15 374 - -
Vivi4g04126 443 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04126 443 SUPERFAMILY Protein kinase-like (PK-like) 17 291 IPR011009 -
Vivi4g04126 443 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04126 443 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Vivi4g04126 443 Gene3D Kinase associated domain 1, KA1 311 422 - -
Vivi4g04126 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Vivi4g04126 443 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04126 443 FunFam Non-specific serine/threonine protein kinase 12 300 - -
Vivi4g04126 443 Gene3D Transferase(Phosphotransferase) domain 1 14 310 - -
Vivi4g04126 443 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04126 Vivi-Chr4 166449975 166451650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04126 4 425 Miscellaneous Gene Families AT3G23000 56.643 2.80e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi4g04126 Pkinase 2.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04126 K12761 - gmx:100305372 628.632