Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04120 ATGAAAACTTTCAAACCTCTTCACCACTTATCCACTCTCTTCTTCTTCCTCCTCCTCCCCTTCCTCAACTCCCAAACTCCAAGACAAGAAAACAACACAGGCTTCACCTGCAACAAAAACCAAACAAACACTTATCCATGTCAAACCTACGCATTCTACAGAGCAACCTCCCCAAACTACCTCGACCTCGCCACAATCTCCGACCTCTTCTCCCTCAGCCGCTTATCCATCTCAAAACCCTCCAACATCTCTTCCCCTTCCACCCCTTTACTCCCCAACCAACCCCTCCTCATCCCCATCACCTGTTCCTGCAACTTCATCAACACCACCTTCGGTTCCATCTCTTACTCCAACATCACCTACACCATCAAACCAAAAGACACTTTTTTCATTGTCTCAACTATAAACTACCAGAATCTCACTACCTACCCTTCCGTTGAAGTCGTTAACCCGAATCTCGTTGCTACTAATCTCTCAATTGGTGATAACGCTGTTTTCCCTATCTTCTGCAAGTGTCCTGATAGAACCAGAAACAGTTCCAGTTTCATGATTTCTTATGTTGTTCAGCCTTCTGATAATGTTTCATCTATTGCTTCGATGTTTGGAGCTTCTGAGAAGTCTATAACTGATGTTAATGGTGAGAAATTATATGATTATGATACTATTTTTGTTCCTGTTACTAAATTACCTGTTTTGAAACAACCTAGTACTGCTGTTGTTCCTTCTCCGGCGCCGAGTCGGAATTCTAATGATGTTGGTGGTGGTGATGGTGGTGATGATAAGAGTGGGATTGTTAGAGGGTTGGCTATTGGGTTGGGGATTTTAGGGTTTTTGTTGATTTTGATTTTGGGGATTTGGTTATACAGAGAGATGGTGTTTAAGAAGGAAGAGAAAGAGAAGGATATGTATTTTGGAGAGAAAGGGAAAAAGGGGGAGGATTATAAGAAGAAGGGGATGGATGTGAATTTTATGGCTAATGTGTCTGATTGTTTGGATAAGTATAGGGTTTTTGGATATGATGAATTGGTGGAAGCTACGGATGGGTTTGATGAAAGTTTTTTGATTCAAGGGTGTGTTTATAAAGGTGAGATTGATGGACAGGTTTATGCTATTAAGAAGATGAAGTGGAATGCTTATGAAGAGCTCAAAATTTTGCAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAAGGATTCTGCATAGAACCAGAAGAATCAAATTGCTATTTAGTATATGAATATGTTGAAAATGGATCTCTATACTCATGGTTACATGAAGACAAAAATGAAAAGTTGAATTGGGTAAGAAGACTAAGAATAGCCATTGACATAGCCAATGGTTTATTATACATTCATGAACACACAAGACCAAAAGTTGTACACAAAGACATTAAAAGTAGCAACATACTCTTGGACTCAAACATGCGAGCTAAGATTGCGAATTTCGGTCTTGCAAAGAGCGGAATAAATGCGATTACAATGCACATTGTAGGAACACAAGGTTACATTTCACCCGAATATCTAACCGACGGTGTCGTGTCAACAAAGATGGATGTGTTTTCCTTTGGTGTTTTGTTGTTGGAGTTGATTTCTGGGAAGGAAGTGATTGATGAGGAGGGAAATGTTTTGTGGGCTAGGGCTATAAAAACATTTGAAGTGAAAAGTGAACAAGAAAAAGCTAAGAGACTTAAGGAATGGTTGGATGAAGCTATTTTGAAAGAGACATGTTCAATGGAAAGTTTGATGGGTGTACTTAGTGTTGCTATTGCTTGCTTGCATAGAGATCCATCAAAGAGACCTAGTATTATAGATATTGTTTATTCACTTACTAAATGTGAAGAGAATGGGTTTGAGCTATCTGATGATGGGTTTGGTACACAAAAATTGGTGGCTAGGTGA 1899 0.3955 MKTFKPLHHLSTLFFFLLLPFLNSQTPRQENNTGFTCNKNQTNTYPCQTYAFYRATSPNYLDLATISDLFSLSRLSISKPSNISSPSTPLLPNQPLLIPITCSCNFINTTFGSISYSNITYTIKPKDTFFIVSTINYQNLTTYPSVEVVNPNLVATNLSIGDNAVFPIFCKCPDRTRNSSSFMISYVVQPSDNVSSIASMFGASEKSITDVNGEKLYDYDTIFVPVTKLPVLKQPSTAVVPSPAPSRNSNDVGGGDGGDDKSGIVRGLAIGLGILGFLLILILGIWLYREMVFKKEEKEKDMYFGEKGKKGEDYKKKGMDVNFMANVSDCLDKYRVFGYDELVEATDGFDESFLIQGCVYKGEIDGQVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEDKNEKLNWVRRLRIAIDIANGLLYIHEHTRPKVVHKDIKSSNILLDSNMRAKIANFGLAKSGINAITMHIVGTQGYISPEYLTDGVVSTKMDVFSFGVLLLELISGKEVIDEEGNVLWARAIKTFEVKSEQEKAKRLKEWLDEAILKETCSMESLMGVLSVAIACLHRDPSKRPSIIDIVYSLTKCEENGFELSDDGFGTQKLVAR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04120 632 ProSiteProfiles LysM domain profile. 184 231 IPR018392 -
Vivi4g04120 632 SUPERFAMILY Protein kinase-like (PK-like) 333 609 IPR011009 -
Vivi4g04120 632 MobiDBLite consensus disorder prediction 236 257 - -
Vivi4g04120 632 CDD LysM 184 224 IPR018392 -
Vivi4g04120 632 FunFam PTI1-like tyrosine-protein kinase 3 415 622 - -
Vivi4g04120 632 Pfam Protein kinase domain 366 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04120 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vivi4g04120 632 ProSiteProfiles Protein kinase domain profile. 331 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04120 632 SMART serkin_6 353 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04120 632 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 12 612 - -
Vivi4g04120 632 Gene3D Phosphorylase Kinase; domain 1 319 414 - -
Vivi4g04120 632 Pfam LysM domain 186 224 IPR018392 -
Vivi4g04120 632 Gene3D Transferase(Phosphotransferase) domain 1 415 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04120 Vivi-Chr4 166380999 166384534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04120 9 611 Receptor kinase-like Gene Family AT2G23770 33.019 2.57e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vivi4g04120 Pkinase 5.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04120 - - lang:109352405 843.958