Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04119 ATGGAATTCAAGGCTACTGAACTTAGATTGGGGTTACCAGGAATAACAGAGGAAGAGGAGAAGAAAATCAAGAACAACAAAAGACAATTACCTCAAACTTCTGAGGAATCTGTTTCAATTTCCAAGGTTACAAATGATGAGCAGATTGTGGAGAGTTCTTCTGCAGCCCCTCCTGCAAAGGCAAAGATAGTTGGGTGGCCACCAATTAGATCTTACAGGAAAAACAGTTTGCAGGAGGCTGATGCTGGTGGGATCTTTGTGAAAGTGAGCATGGATGGTGCCCCTTACCTTAGAAAGATTGACTTAAAGGTCTATGGAGGGTACCCAGAATTACTCAAAGCTCTAGAAACCATGTTCAAGTTAACCATAGGTGAGTATTCTGAAAGAGAAGGTTACAAGGGATCTGAATTTGCACCAACTTATGAAGACAAGGATGGTGATTGGATGTTAGTCGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGGGCAGAAGCTAAAGGTTTGGGCTGTGGTGTATGA 546 0.4249 MEFKATELRLGLPGITEEEEKKIKNNKRQLPQTSEESVSISKVTNDEQIVESSSAAPPAKAKIVGWPPIRSYRKNSLQEADAGGIFVKVSMDGAPYLRKIDLKVYGGYPELLKALETMFKLTIGEYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGAEAKGLGCGV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04119 181 FunFam Auxin-responsive protein 79 181 - -
Vivi4g04119 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 175 IPR003311 GO:0005634|GO:0006355
Vivi4g04119 181 MobiDBLite consensus disorder prediction 19 54 - -
Vivi4g04119 181 MobiDBLite consensus disorder prediction 30 52 - -
Vivi4g04119 181 SUPERFAMILY CAD & PB1 domains 75 170 - -
Vivi4g04119 181 Gene3D - 78 181 - -
Vivi4g04119 181 ProSiteProfiles PB1 domain profile. 84 171 IPR000270 GO:0005515
Vivi4g04119 181 Pfam AUX/IAA family 26 178 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04119 Vivi-Chr4 166374390 166375991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04119 87 177 B3 DNA Binding Superfamily AT2G46530 38.462 1.67e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi4g04119 AUX_IAA 5.3e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04119 K14484 - gmx:100800212 287.73