Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04094 ATGGACGCTGAAACTCAATGCAACGTTGAAGAAATGGTGATGGATTTACTCACAAAAGCCGAATTTGAACAAGCCACTGAGTTCACCATCCGACTTGCCGCTTCCGAACGACTCGGTATCGACCTTTCCGACTCACACAGCAGACAATTCGTCAGAAACATCATCGCCACCAACAAGAAACCGCCGCAAGTTTCCACCGAGGCAGTCAAAGAACCGCCGCAAGAGTTGAATAAGGTGGCGGGAGTGAAATGCAAGAACGACGACTCTGATAAAGTCATTTGTGAGCTATCAAGCAACAGGAAGGTGACTGTGGGAGATTACAAAGGAAGGACCTTGGTATCAATTAGGGAGTACTTTCTGAAAGATGGAAAACAGCTTCCCACTCCTAAAGGATGA 396 0.4697 MDAETQCNVEEMVMDLLTKAEFEQATEFTIRLAASERLGIDLSDSHSRQFVRNIIATNKKPPQVSTEAVKEPPQELNKVAGVKCKNDDSDKVICELSSNRKVTVGDYKGRTLVSIREYFLKDGKQLPTPKG 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04094 131 Pfam DEK C terminal domain 5 55 IPR014876 -
Vivi4g04094 131 Gene3D Transcriptional Coactivator Pc4; Chain A 83 131 IPR009044 GO:0003677|GO:0006355
Vivi4g04094 131 SUPERFAMILY ssDNA-binding transcriptional regulator domain 93 131 IPR009044 GO:0003677|GO:0006355
Vivi4g04094 131 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 131 IPR045125 GO:0003713|GO:0060261
Vivi4g04094 131 Pfam Transcriptional Coactivator p15 (PC4) 94 131 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04094 Vivi-Chr4 165591047 165593669 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vivi4g04094 DEK_C 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04094 K25815 - vvo:131600165 261.536