Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04070 ATGTATTTGCATTTTGAGCAAAATCTGTCTCCTCTATTTGTTAGTTTTGCTGTTATTAATATAAATGTATTTCCTGAAGTAAGCCTTGTCATGAATTTGTTGCAGGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGATTTAAAAAAGTTACTAAGTGCTGAAGATACAGATTTAATTAGTCGTATGAAGTCTATCCTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTCATGCAGCAACTTGTTAAAAAATCACAGCAGTCATTGACATCAACTGTCCTCAAAACCGCCCTGATACCGTACTTGAACTCGCAGTTAAAGAAGGGAATTCCATTGCCGATTCTTAAGGGTTTCGCCCTTAAGAACGCTCGAATCATGAACACTCTGCCGTGGATTGTGTTGTCTAGAGTGGAGAAAGAATACCTCAAATCTTATTTTTTTTCTATGAGTATATGA 486 0.3663 MYLHFEQNLSPLFVSFAVININVFPEVSLVMNLLQELWSMLEFMMPDIFASEDVDLKKLLSAEDTDLISRMKSILGPFILRRLKSDVMQQLVKKSQQSLTSTVLKTALIPYLNSQLKKGIPLPILKGFALKNARIMNTLPWIVLSRVEKEYLKSYFFSMSI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04070 161 Gene3D - 29 107 IPR038718 -
Vivi4g04070 161 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 97 144 IPR017943 GO:0008289
Vivi4g04070 161 PANTHER SNF2/RAD54 HELICASE FAMILY 32 99 - -
Vivi4g04070 161 FunFam Transcription regulatory protein SNF2 61 91 - -
Vivi4g04070 161 Pfam SNF2-related domain 31 99 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04070 Vivi-Chr4 165169892 165172096 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi4g04070 SNF2_N 4.2e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04070 K14439 - vvo:131595769 311.612