Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04066 ATGGATTCACATCAAAACTGTTTGCCAATCACTTTGAAAGGTCCTAATAGGGTTCCTATGGTTAGGCGTGAACTTGGGTCAAACGGAACTAAGTTGTCTTTGCTGACCAATCACTTTGAAGTGAATGTTGGCAACACTGATGGATATTTCATCCAGTACAGTGTTGCTCTTTTTTATGAAGATGGATGTCCTGTTGAGGGGAAGGGTTCTGGTCGAAAGATATTAGACCGAGTTCAAGCAACCTATAATTCTGAGCTGAATGGGAAAGATCTTGTATACGATGGTGAAAAAACATTGTTCACTACCGGCTCTCTAGCTCAGAACAAGCTTGAGTTTACGGTTGATCTTGAAGATGTTACATCAAACAGGAATAATGGTAACCTGAGCCCGAAAGTAAGTGGAAGTCCTAATGAAGCTGATAGGAAGAGGGTCCAAAAATCCTTCCGTTACAAGAAATATAAAGTTGAAATCAGCCTTGCCTCCAAAATTCCTCTGCAGGCTATTGCCAATGCTTTAAAGGGGAATGAGACAGAGAATAATCGAGAAGCCATTAGGATGCTTGATATTATACTTAGACAACATGCTGCCAAACAAGGTTGTCTTCTTGTGCGTCAAAATTTCTTCCATAATGATGCTAACAATTTCACAGATGTGGGAGGTGGTGTACTTGGGGCTCGAGGGCTGCATTCCAGCTTTAGAACAACACAAAGCGGGCTTTCTCTGAATATAGATGCCTCCACAACTATGATTCTCCGTCCTGGGCCTGTTGTGGACTTCTTGATGGCAAACCAAAATGCAAGTGATCCTCTTAGTGTTGACTGGCCTAAGGCCAAAAGGACTCTAAAAAATTTGAGGGTCAAAACCAAGCCTTCAAACCGAGAATACAAGATTACTGGGCTGAGTGACTTGTCTTGCAAGGAACAAATGTTCACTCTGAAGAAGAAGAGAGGGGACGGAGAAGATGACTCCGAGAAGATCAGTGTATATGATTATTTCGTAAACCGGCGGAATATTACCCTGGGGTACTCAGCTGATCTTCCATGTATTAATATTGGGAAGCCCAAACGACCTACTTATGTCCCAATTGAGCTTTGTGATTTGATCTCCCTTCAACGGTACACAAAATCCATATCCCCTCTCCAACGGTCTTCTCTTATTGAGATGTCGAGGCAGAAGCCTCAAGAACGGATGAGGGTTTTGTCCGATGCACTGAAATCCAGTAACTATGATTCTGAACCCATGCTAAGGAACTGTGGCATTTCTATAACTTCTGGGTTCACACAAGTGGATGGAAGGGTTTTGGAGGCACCGAGGCTGAAGTTCGGAAATGGGGAAGATTTCAATCCGAGAAACGGGAAATGGAATTTGAATAACAAGAAATTTGTGGAACCTGTAAAAATTGTAAAGTGGGCTGTGGTGAACTTTTCTACTCCTTGCGATGTGCAAGGACTTGTCAGTGATCTGATTAAATGTGGACGGATGAAAGGAATTCAAGTTGAACATCCTTTTGATGTGTATGAAGAGCAAGGCCAGTTTAGGTGTTCATCACCTGTCTTACGTGTTGAGAAAATGTTTGAGCATGTTCTGTCCAAACATGCTGATTCGCCTCAATTTCTCCTCTGTCTACTTCCCGAGAGAAAGATCTGTGAACTTTATGGTCCATGGAAGAAGAAGAGTCTTGTTGAATTTGGAATTGTTACTCAGTGCATAGTGCCCTCCTCTAGCTTAAACGACCAATACCTGACCAATGTTTTAATGAAGATCAACGCTAAGCTTGGTGGGATGAATTCTCTTTTAGGGGTTGAACATTCTTCATCCATCCCAATTGTATCTAAAGCTCCTACTCTAATTTTGGGCATGATTGTTTCTCATGGTTCACATGGTCATTCCGACATTCCATCTATTGTTGCGGTCGTAGGCTCGAGACAATGGCCACTAATATCTAAATATAGGGCATGTGTCCGAACCCAGGGTTCTAAGGTTAAAATGATTGACAATTTGTTCAAGCCAGTGCCTGGTACGAAGGACGATGAAGGAATTATAAGGGAACTCTTAAATGATTTCTATACAAGTTCCGGAGGAAGAAAACCGGAAAATATCATCATATTCAGGGATGGTGTCCGTGAGTCGCAGTTCAATCAAGTCTTGAACATTGAACTTGGCGAAATAATTAAGGCCTGTGAATTTCTTGATGAGACTTGGAACCCCAAGTTTACACTTATCATTTCCCAAAAAACAAGTTACGCAAAATTCTTCAATCCTGGATCTTCAGACAATGTGCCGGCTGGGACTGTTGTGGACAACCAAATTTGTCATCCAAAGAATTATGACTTCTATATGTGTGCTCATGCAGGAATGATTGGGACTACTAGTAGGCCAACTCATTATCATATTCTGTTGGATGAGATAGGCTTTTCTACAAATGATCTACAGGATCTGGTGCACTCACTTTCTTATGTCTACCAGAGGAGCACCACTGCAATATCTGTTGTTGCTCCAATCAGCTATGCTCACTTGGCTGCCTCACAAGTTGGACAGTTTATGAAGTGTGATGATAGATCTGAAACAGCATCCATTCCCGGTGGAATAAACGCCTCTCCAGTCCCACAACTTCCAAAATTAAAAGAGAATGTCCAAGATTCCATGTTTTTTGTTTAA 2658 0.4187 MDSHQNCLPITLKGPNRVPMVRRELGSNGTKLSLLTNHFEVNVGNTDGYFIQYSVALFYEDGCPVEGKGSGRKILDRVQATYNSELNGKDLVYDGEKTLFTTGSLAQNKLEFTVDLEDVTSNRNNGNLSPKVSGSPNEADRKRVQKSFRYKKYKVEISLASKIPLQAIANALKGNETENNREAIRMLDIILRQHAAKQGCLLVRQNFFHNDANNFTDVGGGVLGARGLHSSFRTTQSGLSLNIDASTTMILRPGPVVDFLMANQNASDPLSVDWPKAKRTLKNLRVKTKPSNREYKITGLSDLSCKEQMFTLKKKRGDGEDDSEKISVYDYFVNRRNITLGYSADLPCINIGKPKRPTYVPIELCDLISLQRYTKSISPLQRSSLIEMSRQKPQERMRVLSDALKSSNYDSEPMLRNCGISITSGFTQVDGRVLEAPRLKFGNGEDFNPRNGKWNLNNKKFVEPVKIVKWAVVNFSTPCDVQGLVSDLIKCGRMKGIQVEHPFDVYEEQGQFRCSSPVLRVEKMFEHVLSKHADSPQFLLCLLPERKICELYGPWKKKSLVEFGIVTQCIVPSSSLNDQYLTNVLMKINAKLGGMNSLLGVEHSSSIPIVSKAPTLILGMIVSHGSHGHSDIPSIVAVVGSRQWPLISKYRACVRTQGSKVKMIDNLFKPVPGTKDDEGIIRELLNDFYTSSGGRKPENIIIFRDGVRESQFNQVLNIELGEIIKACEFLDETWNPKFTLIISQKTSYAKFFNPGSSDNVPAGTVVDNQICHPKNYDFYMCAHAGMIGTTSRPTHYHILLDEIGFSTNDLQDLVHSLSYVYQRSTTAISVVAPISYAHLAASQVGQFMKCDDRSETASIPGGINASPVPQLPKLKENVQDSMFFV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04066 885 Pfam PAZ domain 257 385 IPR003100 GO:0005515
Vivi4g04066 885 Pfam N-terminal domain of argonaute 31 191 IPR032474 -
Vivi4g04066 885 Pfam Argonaute linker 2 domain 395 441 IPR032472 -
Vivi4g04066 885 Pfam Piwi domain 539 849 IPR003165 GO:0003676
Vivi4g04066 885 SMART Piwi_a_2 538 849 IPR003165 GO:0003676
Vivi4g04066 885 SUPERFAMILY PAZ domain 248 409 IPR036085 GO:0005515
Vivi4g04066 885 ProSiteProfiles PAZ domain profile. 278 369 IPR003100 GO:0005515
Vivi4g04066 885 Pfam Mid domain of argonaute 448 499 IPR032473 -
Vivi4g04066 885 Pfam Argonaute linker 1 domain 203 250 IPR014811 -
Vivi4g04066 885 SMART DUF1785_2 201 253 IPR014811 -
Vivi4g04066 885 Gene3D - 606 885 IPR036397 GO:0003676
Vivi4g04066 885 CDD PAZ_argonaute_like 253 368 - -
Vivi4g04066 885 SUPERFAMILY Ribonuclease H-like 524 847 IPR012337 -
Vivi4g04066 885 Gene3D paz domain 247 373 - -
Vivi4g04066 885 ProSiteProfiles Piwi domain profile. 538 849 IPR003165 GO:0003676
Vivi4g04066 885 Gene3D - 433 600 - -
Vivi4g04066 885 FunFam Protein argonaute 3 607 885 - -
Vivi4g04066 885 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 26 851 - -
Vivi4g04066 885 CDD Piwi_ago-like 413 841 IPR045246 -
Vivi4g04066 885 MobiDBLite consensus disorder prediction 121 141 - -
Vivi4g04066 885 FunFam Protein argonaute 7 248 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04066 Vivi-Chr4 164997945 165003855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04066 22 884 Eukaryotic Initiation Factors Gene Family AT5G43810 33.702 5.34e-149 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04066 K11593 - gmx:100779439 1325.07