Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04040 ATGGAAGCAACATCAACTTGCTTCTTCTGCGGTAGAATCCCATCAAAATCCAAACTTGCTTCATCTTCTTCATTTGGGTCATTCTGCTTATTAACACGCAACAATGTTAATACAATCACGTGCAAAACTTCAATGAAAACCCATAACCGTGTTATCCAAAACGTCACAAACAGTAACGAAACGAAGATTCCAAGCAACACAAAAAGAAGAAGGAGGAGAAGAAGAAATGGAGTAGCAGTGGAAGAGCAACCACAACAACAGAGGGAAATTCAAATTCAAGTACCCAGTGTTTATGTTCATGAGAATACTGGTGACCCAATTGGGTGGAAAGAGGTTGGGAAAAGTGTGGTGAGTTGGATTCGTGAGAGTATGAAAGCTATGGCTTTGGATATTGCTTCTGCTGAGTTAGTTGAGGAGTTGGAATTTTCTGAGATGAAACAAAGAATGGGACCTGGTCTTACTTTTGTGATTCAAGCTCAGCCTTATTTGAATGCTGTTCCTATGCCTCTTGGTCTTGAGGTTTCGTGTATGAAAGCTTGTACTCATTATCCTACTCTCTTTGATCACTTTCAGAGAGAGTTGCGTGATGTTCTTCAAGATATGCAGAGTAAACTGTTGGTTGAGGATTGGCGTGAAACTCAGTCTTGGAAATTGCTTAAAGAACTTGCTAATTCAGCTCAGCACAGGGCAGTTGCGAGGAAGATAACACAGCCTAAGATGGTCCAAGGAGTTTTAGGAATGGATATAGAAAGAGTCAAAGCGATACAGAATAGGATAGACGAATTCACCAACAAGATGTCAGAACTGCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAGACCGGATGATGCTTCTGATCCGTCAAAACCAATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTTTGTGACACCATCTGTAACTTAAATGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGATTGAAGGAAACCACCGATTGCCGCCTACTACTCTTTCACCTGGAGAAATGGTTTGTGTGAGAACTTGTGACAGCAAGGGCGCAGTTACAACTTCTTGCATGCAAGGAGTTGTAGACAATCTTGGCGATGATGGTTATAGTATTACCGTTTCTCTAGAGCTACGCCATGGTGATTCTTCTTTCTCTAAACTAGTTGGGAAGAACGTGCGCATTGACCGTATTCAAGGACTGGCTGACACACTTACCTATGAGCGCAACTGTGAAGCACTAATGATGCTTCAGAAGAACGGTTTGCGGAAGAAAAATCCATCAATTTCTGTTATTGCAACTCTATTTGGAGACGAGGAAGATGCTGCGTGGCTTGAGAAGAATAGTCTGGTTGACTGGGGGGAAGAAGAAAAAATTAATGGAGTATTAGGAAGTGAATCCTTTGATAAATCTCAGCAGAGAGCAATTGCATTGGGTTTGAATAAGAAGAGGCCACTATTGGTTATCCAAGGACCTCCTGGTACAGGCAAGACCGGTTTGCTCAAGCAACTTATAGCAAGTGCCGTTGAGCAAGGCGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAGATGTTGGAATAACTATTGTGAGAGTTGGAAACCCAGCCCGTATATCAAAAACAGTAGCGTCAAAGTCTTTGGGAGAAATTGTAAATGGGAAGCTTGCAAGTTACCGCGAAGAGTATGAGAGGAAGAAGTCTGATCTAAGGAAAGATCTAAGACATTGTTTAAAGGATGATTCATTAGCTGCAGGCATACGGCAACTTCTGAAACAGCTAGGAAAATCGCTAAAGAAAAAGGAAAAGCTGATGATAAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACCGGAGCAGCTGATCCTTTTATCCGTAAGCTAGATGCTTTTGACTTGGTTGTCATTGATGAAGCTGGACAGGCAATTGAACCGTCTTGCTGGATACCTATATTGCAAGCAAAACGATGTATTCTTGCCGGTGATCAATGCCAACTAGCTCCTGTGATATTTTCTAGAAAAGCGTTAGAAGGTGGTTTAGGAATATCGCTATTGGAGAGAGCTGCAACTTTGCACGAAGGGATTCTTACTACTAGGTTAACGACGCAATATCGTATGAATGATGCCATTGCAAGCTGGGCTTCAAAGGAAATGTATGGTGGATTGTTGAAGTCCTCAAAGACTGTTTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTGAAGCCTACATGGATAACACAGTGCCCTCTGTTATTGCTTGACACTCGAATGCCATACGGAAGTCTATCAGTTGGCTGCGAAGAGCATCTAGATCCGTCTGGAACTGGCTCGTTATATAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAAAAGCTATTGTGGTTCAGTCCCCTTATGTTGCTCAAGTTCAACTTTTGAGGGACATGCTTGACGAGGTTCCAGAAGCTGCTGGTACAGAAGTTTCCACAATTGATAGCTTTCAAGGCCGGGAAGCTGATGCTGTAATTTTATCAATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTCGGCGATAGCAGAAGAATTAATGTTGCCATCACAAGAGCGCGCAAACATTTGGCTGTAGTATGTGACAGCTCAACTATATGCCACAATACGTTCCTAGCTAGACTTATGCGCCATATTCGACACTTTGGTAGGGTGAAGCATGTAGAACCAGATAGTTTGGGTAGTTTGGGAGGAGGGTTCGGGCTTGGGATGAATCCATTATTACCTTTTATTGAATAG 2886 0.4231 MEATSTCFFCGRIPSKSKLASSSSFGSFCLLTRNNVNTITCKTSMKTHNRVIQNVTNSNETKIPSNTKRRRRRRRNGVAVEEQPQQQREIQIQVPSVYVHENTGDPIGWKEVGKSVVSWIRESMKAMALDIASAELVEELEFSEMKQRMGPGLTFVIQAQPYLNAVPMPLGLEVSCMKACTHYPTLFDHFQRELRDVLQDMQSKLLVEDWRETQSWKLLKELANSAQHRAVARKITQPKMVQGVLGMDIERVKAIQNRIDEFTNKMSELLNIERDVELEFTQEELDAVPRPDDASDPSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSKGAVTTSCMQGVVDNLGDDGYSITVSLELRHGDSSFSKLVGKNVRIDRIQGLADTLTYERNCEALMMLQKNGLRKKNPSISVIATLFGDEEDAAWLEKNSLVDWGEEEKINGVLGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQLIASAVEQGERVLVTAPTNAAVDNMVEKLSDVGITIVRVGNPARISKTVASKSLGEIVNGKLASYREEYERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGKSLKKKEKLMINEVLSSAQVVLATNTGAADPFIRKLDAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPSGTGSLYNEGEADIVLQHVFSLIYAGVSPKAIVVQSPYVAQVQLLRDMLDEVPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNTFLARLMRHIRHFGRVKHVEPDSLGSLGGGFGLGMNPLLPFIE 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04040 961 Pfam AAA domain 709 912 IPR041679 -
Vivi4g04040 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 920 IPR027417 -
Vivi4g04040 961 CDD DEXXQc_SMUBP2 482 732 - -
Vivi4g04040 961 Gene3D - 731 940 IPR027417 -
Vivi4g04040 961 Coils Coil 584 604 - -
Vivi4g04040 961 FunFam DNA helicase A 731 939 - -
Vivi4g04040 961 CDD SF1_C_Upf1 733 929 IPR047187 -
Vivi4g04040 961 Gene3D - 310 416 - -
Vivi4g04040 961 Pfam AAA domain 483 700 IPR041677 GO:0004386
Vivi4g04040 961 Coils Coil 252 272 - -
Vivi4g04040 961 Gene3D - 417 715 IPR027417 -
Vivi4g04040 961 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 136 939 - -
Vivi4g04040 961 MobiDBLite consensus disorder prediction 55 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04040 Vivi-Chr4 161420116 161424828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04040 470 672 Core DNA Replication Machinery Family AT1G08840 24.631 3.93e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04040 - - aip:107625008 1471.06