Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04017 ATGCTTCAAAGAATGAATCTGTGTCTTGTTTTGTTTCTTTTAGTGTTTGTAATTGCCATGTCAGTGTCACCTCTTGCTGCAGCAAACAACCAAAGGAGAGAGGCAAATGCTCTGTTAAAATGGAAACAAAGCTTTGACAACCAAAGCAAGGCTTTGCTTTCTTCATGGATTGGTAATAGTCCTTGTAGTTGGGAGGGAATCACATGTGATCACGAGTCTAAATCCATCTATAAGGTAAATCTCACCAATTTTGGACTAAAAGGTACGCTTCAGAGTCTCAAATTCTCTTCACTTCCAAAAATCCGCACCTTAGTCTTAAGAAACAACTCCTTGCATGGAATTGTTCCACACCATATTGGTGAAATGTCCAATCTAAACACTCTTGATTTGTCATTTAACAATTTCTCTGGTAGTATTCCCAATACTATTGGTAATCTGTCTAAACTCTCCTATCTTGGGCTTAATAATAATAATCTTTCTGGAATTATTCCATCTGAGATTACCCAATTGTTTGGTCTTTCTGTATGGTTTATGGGTTTTAATAGTGAATTAAGTGGACCCCTCCCTCAAGAAATTGGTAAAATGAGGAATCTCACAATTCTTGATAGCCCGTGGTGCAATCTCACAGGAACTATACCCGTCTCAATAGAAAAGATAACTAATTTGTCTCATATTGATGTCGGAGGAAACAAACTCTATGGCAACATTCCTAAGAGAATATGGAAAATGGACCTAAAACATTTGTCACTTGCAGTTAATAACTTCATTGGTTCTTTTTCACAAGATATTTTCAAGTTAAGGCACCTAGAGATTTTACTTCTCAGTAACAGTGGTCTTTCCGGTTTCATGCCAAAGGAACTTCAGATGGCGAGGAACTTAATAATAGTTTCTATGAGTAATTGCGATCTCAATGGGTCCATACCAATATCAATAGGAACATTGACTAATATATCAACACTCATTTTAAGTAACAACCAAATTTCTTGCCACATTCCTCGTGAAATAGGCAATTTAGTCAACCTGGAGTCACTAGCTCTTGATTCTAATAGCCTTTCTGGATCCATTCCTCGTGAAATTTTCAAGTTGGTTAACCTTGAGGCACTAACTCTTGGTAATAATAGTCTTTCTGGTTCCATTTCTCGAGAAATTGGTAACTTGGTTAAACTTCAGAAACTATTGCTTGAATATAACAGTCTTTCAGGCTTCATTCCTAGAGAAATTGGATCTGTAAAACAACTCAGTCAACTTGATTTGTCTCAAAACCATCTTTCTGGCCCAATCCCTTCTACAATTGGAAACTTGAACAGTATGCAATTACTCTACCTTTATGAAAACCATTTTACTGGTATCATTCCAACTGAAGTGGGAAAACTTTATTCTCTTTTAACAATCCAATTGTTGGATAATAACTTGTCCGGACCAATCCCACCATCTATAGGTAATTTGATTAATTTAAACTCTATTCTGCTTAGTCAAAATAACCTCTCTGGACCAATCCCACCATCTATAGGTAATTTGGTTAATTTAACCTCTATTGTGCTTGATCGAAATAACCTCTCTGGATCTATTCCTTCGACTATTGGAAATTTAACAAAACTCATTCGTTTACATCTTTTCTCAAATCAATTTAGTGGAAATTTTCCAAATGAAATGAACATGATAACCAATTTGAAAAGTTTGCAGTTATCTTATAACAATTTTATAGGTCATTTACCTCACAATATTTGTGCTGGTGGAAATTTGGAACAATTCAGTGCTACACTTAACCAGTTCTCAGGTCCAGTTCCTAAGAGTTTATATAATTGCTCAAGCCTTGTGAGAGTAACACTTGAAAATAATCAACTGACTGGAAATATAACAGAAAGTTTTGGTGTGTATCCTAATTTGGTCTACATGCAATTGAGTGATAATGGTTTTTATGGCCATTTATCATCAAATTGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCCAATAACAATTTAACAGGAAGCATACCACCAGAATTGGCTCAGGCAACTAATTTGCAGGAACTTAACTTGTCTTCAAACCATCTTACTGGAAATATTCCAAAGGAGTTCGAAAACTTATCTTTGTTGTACAAACTCTCAATAAGTAACAATCATCTTTCGGGAGAAGTTCCTACACAAATTGCATCATTGCATGAACTAACGGCCTTGGAGCTTGCAACAAATGATTTCAGTGGCTTCATCCCTGAAAGTCTTGGAAGGTTGTCTATGTTATTGATGTTGAATTTGAGTCAAAATAAGTTTGAAGGAAACATTCCTGTTGAGTTTGGAAAATTGGAAGTTATTGAAAGTCTTGATCTCAGTGAGAATTTTTTAAATGGAACCATACCAGCAATGCTTGGACAGTTAAATCATTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTACTATTCCCTTGAAATATGGTGAGATGTTGAGCTTGACAAATGTTGATATATCATACAACCAATTGGAGGGTCCGGTTCCAAGCATTTCAGCTTTCCAAAATGCTTCATTTGAAGCACTCAGAAATAACAAAGGCTTGTGCGGTAACATATTTGGCCTAGAGCCTTGCTCAACATCAGGTGACAAGTTTCATAATCATAAGAATAACACAATTTTGGTGTTAGTCTTACCCATCACTCTAGGCACTCTCTTTTTAGCATTATTTGCTTATGGGCTCGCATATCATCTATGTGGAACTTCAAGAGAAAACAAGGCTCCTGAAGAATCACCAACAGAAAATCTATTCACAATATGGAGTTTTGACGGGAAAATGGTGTATGAGAATATTATTGAAGCCACTGAAGAGTTTGACAACAAGCATCTCACTGGAGTTGGAGGCCATGGCAGTGTTTACAGAGCTGAGTTGTGTACCGGACAAGTTGTAGCTGTGAAGAAAATTCATTCAATACAAAATGGAGAAATGTCAAATCTGAAAGCTTTTGAAAGTGAGATCAAAGCTTTAACAGAAATCCGACATCGAAACATTGTGAAGTTATATGGATATTGTTCACATCCATTGCATTCGTTTTTGGTTTATGAGTTCTTGGAGAATGGTAGCGTCGACAAGATCTTGAAAGACGATGAGCATGCAACTACATTTGATTGGAAAAGAAGGGCCCATGCAATTAAAGATGTTGCAAATGCTTTATGCTATATGCATAATGATTGTTCACCTCCTATTGTTCATCGCGATATCTCCAGCAAGAATGTGATTTTGGATTTGGAATATGTAGCTCATGTATCAGACTTCGGAACAGCTAAGTTTCTAAATCCTGATTCATCCAACTGGACCTCTTTTGTTGGAACATTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAGTGTGATGTGTACAGTTTTGGAGTATTAACCATGGAAATACTTTTTGGAAAGCATCCAGGAGACACCGTATCGACATTGTTGCAATCAAGTGGTGTAGGTTTGACAATTGATGCTTTGTCATTGCTTGATAAGTTGGATCAGCGTCTCCCTCATCCTAGCAATGCTATTGGGAAAGAGTTGGTATCAATTATAAGGATTGCATGTCATTGCTTAACTGAGAGCCCGCGTCGTCGCCCTACAATGGAAGATGTTTGCAAGGAGATTGTAATGTCAAAGTGA 3663 0.3669 MLQRMNLCLVLFLLVFVIAMSVSPLAAANNQRREANALLKWKQSFDNQSKALLSSWIGNSPCSWEGITCDHESKSIYKVNLTNFGLKGTLQSLKFSSLPKIRTLVLRNNSLHGIVPHHIGEMSNLNTLDLSFNNFSGSIPNTIGNLSKLSYLGLNNNNLSGIIPSEITQLFGLSVWFMGFNSELSGPLPQEIGKMRNLTILDSPWCNLTGTIPVSIEKITNLSHIDVGGNKLYGNIPKRIWKMDLKHLSLAVNNFIGSFSQDIFKLRHLEILLLSNSGLSGFMPKELQMARNLIIVSMSNCDLNGSIPISIGTLTNISTLILSNNQISCHIPREIGNLVNLESLALDSNSLSGSIPREIFKLVNLEALTLGNNSLSGSISREIGNLVKLQKLLLEYNSLSGFIPREIGSVKQLSQLDLSQNHLSGPIPSTIGNLNSMQLLYLYENHFTGIIPTEVGKLYSLLTIQLLDNNLSGPIPPSIGNLINLNSILLSQNNLSGPIPPSIGNLVNLTSIVLDRNNLSGSIPSTIGNLTKLIRLHLFSNQFSGNFPNEMNMITNLKSLQLSYNNFIGHLPHNICAGGNLEQFSATLNQFSGPVPKSLYNCSSLVRVTLENNQLTGNITESFGVYPNLVYMQLSDNGFYGHLSSNWGKCKNLTSLKISNNNLTGSIPPELAQATNLQELNLSSNHLTGNIPKEFENLSLLYKLSISNNHLSGEVPTQIASLHELTALELATNDFSGFIPESLGRLSMLLMLNLSQNKFEGNIPVEFGKLEVIESLDLSENFLNGTIPAMLGQLNHLETLNLSHNNLSGTIPLKYGEMLSLTNVDISYNQLEGPVPSISAFQNASFEALRNNKGLCGNIFGLEPCSTSGDKFHNHKNNTILVLVLPITLGTLFLALFAYGLAYHLCGTSRENKAPEESPTENLFTIWSFDGKMVYENIIEATEEFDNKHLTGVGGHGSVYRAELCTGQVVAVKKIHSIQNGEMSNLKAFESEIKALTEIRHRNIVKLYGYCSHPLHSFLVYEFLENGSVDKILKDDEHATTFDWKRRAHAIKDVANALCYMHNDCSPPIVHRDISSKNVILDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTMEILFGKHPGDTVSTLLQSSGVGLTIDALSLLDKLDQRLPHPSNAIGKELVSIIRIACHCLTESPRRRPTMEDVCKEIVMSK 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04017 1220 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1069 1081 IPR008266 GO:0004672|GO:0006468
Vivi4g04017 1220 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 180 381 - -
Vivi4g04017 1220 Gene3D Transferase(Phosphotransferase) domain 1 1024 1220 - -
Vivi4g04017 1220 SMART LRR_typ_2 338 362 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 554 578 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 122 145 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 794 818 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 314 337 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 675 697 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 266 289 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 146 170 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 506 530 IPR003591 -
Vivi4g04017 1220 SMART LRR_typ_2 386 410 IPR003591 -
Vivi4g04017 1220 ProSiteProfiles Leucine-rich repeat profile. 676 699 IPR001611 GO:0005515
Vivi4g04017 1220 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Vivi4g04017 1220 Pfam Leucine rich repeat 652 711 IPR001611 GO:0005515
Vivi4g04017 1220 FunFam Nuclear pore complex protein NUP107 31 179 - -
Vivi4g04017 1220 PRINTS Leucine-rich repeat signature 794 807 - -
Vivi4g04017 1220 PRINTS Leucine-rich repeat signature 413 426 - -
Vivi4g04017 1220 SUPERFAMILY L domain-like 70 333 - -
Vivi4g04017 1220 Gene3D Ribonuclease Inhibitor 245 422 IPR032675 -
Vivi4g04017 1220 Gene3D Ribonuclease Inhibitor 541 868 IPR032675 -
Vivi4g04017 1220 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Vivi4g04017 1220 Gene3D Ribonuclease Inhibitor 31 177 IPR032675 -
Vivi4g04017 1220 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 382 475 - -
Vivi4g04017 1220 SUPERFAMILY Protein kinase-like (PK-like) 923 1215 IPR011009 -
Vivi4g04017 1220 FunFam Uncharacterized protein 576 874 - -
Vivi4g04017 1220 SUPERFAMILY L domain-like 601 857 - -
Vivi4g04017 1220 PANTHER LEUCINE RICH REPEAT KINASE 2 95 501 - -
Vivi4g04017 1220 Gene3D Ribonuclease Inhibitor 423 540 IPR032675 -
Vivi4g04017 1220 Gene3D Phosphorylase Kinase; domain 1 908 1023 - -
Vivi4g04017 1220 Pfam Protein kinase domain 948 1215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04017 1220 Gene3D Ribonuclease Inhibitor 178 244 IPR032675 -
Vivi4g04017 1220 SUPERFAMILY L domain-like 244 618 - -
Vivi4g04017 1220 FunFam MDIS1-interacting receptor like kinase 2 isoform A 476 575 - -
Vivi4g04017 1220 ProSiteProfiles Protein kinase domain profile. 945 1218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04017 1220 FunFam MDIS1-interacting receptor like kinase 2 1024 1220 - -
Vivi4g04017 1220 FunFam Leucine-rich repeat receptor protein kinase MSP1 908 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04017 Vivi-Chr4 161108434 161113963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04017 197 764 Receptor kinase-like Gene Family AT4G08850 32.337 1.56e-75 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi4g04017 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04017 - - gmx:106794215 1331.24