Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04006 ATGGCTGGAGTAAGAGAACAAGACCAATACATGCCAATAGCAAATGTGATAAGAATAATGAGAAGGATTCTTCCATCACACGCCAAAATCTCCGATGACGCGAAAGAGACGATTCAAGAGTGTGTATCTGAATACATCAGCTTCATAACAGCAGAAGCAAACGAGCGGTGTCAAAGAGAGCAGAGAAAAACTGTTACAGCAGAAGATTTGCTATGGGCAATGGGGAAGCTAGGGTTTGATGATTATGTTCATCCTTTAACATTTTACCTTCAACGCTACCGTGAAAGTGAAGGCGAACCTGCTTCTGTTAGACGCACTTCTTCTCTTGCTATGCCTCCTCCTCTTCCAATGCAGCAGCAGCAGATTCCGTCGTTATCATCAATGCCGGTTCTTAATAATAGTAGTAGTAATAATAGTGTTTATGGTTTTGGGTATGGTTTTGAATTTGATCAAGGGTTTGGTGGTGGTGATGCTAATCCTTCTTCTTCTGCTGCTGCTGCTTTTGTACCTAACTTTGATTATTATCCTCATCTCAAACGTGATAATAACATGTGA 555 0.4108 MAGVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITAEANERCQREQRKTVTAEDLLWAMGKLGFDDYVHPLTFYLQRYRESEGEPASVRRTSSLAMPPPLPMQQQQIPSLSSMPVLNNSSSNNSVYGFGYGFEFDQGFGGGDANPSSSAAAAFVPNFDYYPHLKRDNNM 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04006 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi4g04006 184 FunFam Nuclear transcription factor Y subunit B-6 1 112 - -
Vivi4g04006 184 Gene3D Histone, subunit A 2 124 IPR009072 GO:0046982
Vivi4g04006 184 SUPERFAMILY Histone-fold 7 105 IPR009072 GO:0046982
Vivi4g04006 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Vivi4g04006 184 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Vivi4g04006 184 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vivi4g04006 184 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vivi4g04006 184 MobiDBLite consensus disorder prediction 100 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04006 Vivi-Chr4 161008749 161009324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04006 4 111 CCAAT-HAP3 Transcription Factor Family AT5G47670 78.704 7.84e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi4g04006 CBFD_NFYB_HMF 2e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04006 K08065 - gmx:547959 206.068