Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04005 ATGTTTCAGAAAATGAAGCTTTTATCAATGCATTGTCTATTTTTGTTCTTTTATATGTTTGTTATGGCCACAACACCTCACGTTTCAGCGAAAATCCAACGCAGCGAAGCAAATGCTATGTTAAAATGGAAAGAAAGCTTTGACAACCAAAGCAAGGCTTTGCTCTCTTCATGGATTGGTAACAATCCTTGTAGTAGTTGGAAAGGAATCACATGTGATAATGAGTCAACATCCATCTACAAGATCAACCTCACCAATATTGGAGTAAGAGGTACACTTCAACTTCTCAATTTCTCATCACTGCCAAAAGTCAGAAACATAGTTTTAAAAAACAACTCCTTCTATGGAGGTGTTCCATCCCATATTGAGGTAATGTCCAATCTAAAAATTCTTGATTTGTCCAATAATAAATTCTCTGGCCGAATTCCACATTCAATAGGTAATTTAGTTAACTTAGATACTCTTTTCCTTTATGGAAATGAGTTTTCTGGACCAATTCCTTCTACTATTGGAAACTTGACAAAACTTGTTAAACTGTCACTTTTTGCAAACCAGTTGAGTGGTAAAATTCCTAAAGAAATGAATAATCTTACCAATTTGGAACTTTTGCAATTCAGCGATAATAAGTTCATTGGTCATTTACCTGACGACGTGTGTCTAGGTGGAAAGTTGTCACACTTCTGTGCTACTATTAACCAATTCACCGGTCGAGTTCCAAAGAGTTTGAGGAATTGTTCAACTCTTAAGCGAGTTAGACTTGAACAAAACCTGCTAACCGGAAATTTAGCAGATATGTTTGGTGTGTATCCGAACTTGGACTACATGGGTTTGAGTGGCAATAATTTTTATGGCCATATTTCACCAAACTGGGGAAAATGTAAGAACCTTACAAGCCTTAAAATCGCGAATAATAATTTAACAGGAAGCATACCACCCGAACTGGCGGAAGCAACCAATTTACATGTACTAGACTTGTCCTCGAATCAACTTATAGGAGAAATTCCAAAGGAGCTAGGAAACTTATCTTCATTGATCCAACTCTTAATAAGTAACAATCATCTTTCGGGACAAGTTCCTATACAAATTGCATCATTGCGGGAACTAGCTACCTTGGATCTTGCAACAAATAATTTAAGTGGCTTCATCCCAGAGCAACTTGGATGGTTACCTATGTTATTGAACTTGAATTTGAGCAACAATAAGTTTGAAGGAAACATTCCTCTTGAAAGTGGCCAATTACAAGTTATTGAAAATCTTGATCTTAGTGCAAATTTTTTAGACGGGACCATACCATCCATGCTTGGACAATTAAAACACTTAGAAACATTAAATGTCTCACATAATAATCTTTCTGGTGAAATTCCCTTTATCTATGGTGATATGTTAGGATTGACAGTTGTTGATATATCATACAACCAATTGGAGGGTCCGATTCCAAGCATTCCAGCATTCCGAAAAGCTTCAATTGAAGCACTGAGAAATAACAAAGGCTTGTGTGGTAACGTCTCTGGCCTTAGGCCTTGCTCAACATCAAGTGGAAAGGTTCATGGTCATAAGCCTAACAAACTTTTGATGGTTGTCTTACCCCTCACTCTAGGAACTTTATTGTTAGTATTATTTGTTTATTGGCTCTCATATCGTCCCTTCCGAGCTTCAATCACAGAAGAGTACAGCGGTAGAGAAGTATTAGACACTAACAATCTATTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAATATTATTGAAGCCACCGGAGATTTTGATAACAAGTATCTCCTTGGAGTTGGAGGACATGGTAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTTGTAGCGGTGAAGAAACTCCATCAAATACAAAATGAAGAAATGACCAATCTGAAAACTTTTGCAAGTGAGATCAAAGCTTTAACAAAAATTCGTCATCGAAACATTGTGAAGCTATATGGATTTTGTTTACATGCTCAACACACATTTTTGGTCTACGAGTTCTTGGAGATGGGTAGTATGGACAAGATTTTGAAAGATGATGAACAAGCATCAATATTCGATTGGACTAAGAGGTTGAATGTAATCAAAGATGTCGCTAATGCATTGTGTTATATGCATCATAATTGCTCACCTTCAATTGTTCATCGCGATATATCCAGCAAGAATATTGTTTTGGATTTGAAATATGTAGCTCATGTCTCAGACTTTGGAACTGCTAAGTTTCTTAATCCTGATTCATCCAACTGGACTTATTTTGTTGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAAAGATGTGATGTGTATAGTTTTGGAGTATTAACCTTAGAAATACTTTTTGGAAAGCATCCTGGAGATATTGTATCTACTTTATTGCAATCAAATGGTATAAGCTCAACAATTGATGTGATGTTGCTGATGGATAAGTTGGATCAACGTCTCCCTAGTCCTACAAATGATACTGAGAAAGAGGTGATATCAATTGTAAGGTTAGCAACTTTTTGCTTGAATAAAATTCCACGCACTCGCCCTACAATGGAGCAGGTTTGCAAAGAGTTTGTAATGTGA 2592 0.3665 MFQKMKLLSMHCLFLFFYMFVMATTPHVSAKIQRSEANAMLKWKESFDNQSKALLSSWIGNNPCSSWKGITCDNESTSIYKINLTNIGVRGTLQLLNFSSLPKVRNIVLKNNSFYGGVPSHIEVMSNLKILDLSNNKFSGRIPHSIGNLVNLDTLFLYGNEFSGPIPSTIGNLTKLVKLSLFANQLSGKIPKEMNNLTNLELLQFSDNKFIGHLPDDVCLGGKLSHFCATINQFTGRVPKSLRNCSTLKRVRLEQNLLTGNLADMFGVYPNLDYMGLSGNNFYGHISPNWGKCKNLTSLKIANNNLTGSIPPELAEATNLHVLDLSSNQLIGEIPKELGNLSSLIQLLISNNHLSGQVPIQIASLRELATLDLATNNLSGFIPEQLGWLPMLLNLNLSNNKFEGNIPLESGQLQVIENLDLSANFLDGTIPSMLGQLKHLETLNVSHNNLSGEIPFIYGDMLGLTVVDISYNQLEGPIPSIPAFRKASIEALRNNKGLCGNVSGLRPCSTSSGKVHGHKPNKLLMVVLPLTLGTLLLVLFVYWLSYRPFRASITEEYSGREVLDTNNLFTIWSFDGKMVYENIIEATGDFDNKYLLGVGGHGSVYKAELPTGQVVAVKKLHQIQNEEMTNLKTFASEIKALTKIRHRNIVKLYGFCLHAQHTFLVYEFLEMGSMDKILKDDEQASIFDWTKRLNVIKDVANALCYMHHNCSPSIVHRDISSKNIVLDLKYVAHVSDFGTAKFLNPDSSNWTYFVGTFGYAAPELAYTMEVNERCDVYSFGVLTLEILFGKHPGDIVSTLLQSNGISSTIDVMLLMDKLDQRLPSPTNDTEKEVISIVRLATFCLNKIPRTRPTMEQVCKEFVM 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04005 863 SUPERFAMILY L domain-like 61 312 - -
Vivi4g04005 863 SMART LRR_typ_2 365 389 IPR003591 -
Vivi4g04005 863 SMART LRR_typ_2 125 149 IPR003591 -
Vivi4g04005 863 SMART LRR_typ_2 197 221 IPR003591 -
Vivi4g04005 863 SMART LRR_typ_2 318 341 IPR003591 -
Vivi4g04005 863 SMART LRR_typ_2 437 460 IPR003591 -
Vivi4g04005 863 Pfam Protein kinase domain 593 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04005 863 Pfam Leucine Rich repeats (2 copies) 294 335 IPR025875 -
Vivi4g04005 863 Gene3D Phosphorylase Kinase; domain 1 557 668 - -
Vivi4g04005 863 Gene3D Ribonuclease Inhibitor 35 151 IPR032675 -
Vivi4g04005 863 Gene3D Ribonuclease Inhibitor 152 221 IPR032675 -
Vivi4g04005 863 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Vivi4g04005 863 ProSitePatterns Tyrosine protein kinases specific active-site signature. 714 726 IPR008266 GO:0004672|GO:0006468
Vivi4g04005 863 Gene3D Transferase(Phosphotransferase) domain 1 669 863 - -
Vivi4g04005 863 Gene3D Ribonuclease Inhibitor 222 511 IPR032675 -
Vivi4g04005 863 FunFam MDIS1-interacting receptor like kinase 2 669 863 - -
Vivi4g04005 863 FunFam Leucine-rich repeat receptor protein kinase MSP1 554 668 - -
Vivi4g04005 863 ProSiteProfiles Protein kinase domain profile. 590 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04005 863 SUPERFAMILY Protein kinase-like (PK-like) 566 859 IPR011009 -
Vivi4g04005 863 PANTHER LEUCINE RICH REPEAT KINASE 2 98 863 - -
Vivi4g04005 863 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 202 512 - -
Vivi4g04005 863 ProSitePatterns Protein kinases ATP-binding region signature. 596 619 IPR017441 GO:0005524
Vivi4g04005 863 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Vivi4g04005 863 SUPERFAMILY L domain-like 246 500 - -
Vivi4g04005 863 FunFam Nuclear pore complex protein NUP107 33 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04005 Vivi-Chr4 160995767 160998944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04005 101 762 Receptor kinase-like Gene Family AT4G08850 44.521 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi4g04005 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04005 - - tpra:123922968 1014.6