Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03980 ATGGGTCGTGGAAAAATTGAGATTAAGAGGATCGAGAACACAACAACCAGACAAGTAACATTTTCAAAACGAAGAACAGGATTACTCAAGAAGACAAACGAACTTTCTGTCCTTTGTGATGCCGAAATCGGTCTCATAATTTTCTCAAGCACCGGAAAACTTTTCCAGTATTGCTCTCAACCCTATAGGATGGATCAGATCATTGAAAAGTACAAAAGATCTACTGGTAAACGAATTATGGAGGAGCATGATCATCAGATTCAGTTTCACCATAGGGAAGAAATGTTGCATGAGATGGCAATGCTGAGGCAAGAAAGTCTTCGGATTGAATATGGAATTCAACGATATCTTGGAGCTGATGTAAACTGTTTAAAGTATGATGATTTAACTAAACTTGAGGGAGAATTGGAGATCTCTCTTACTAAAATTCGAAACCGTCAGAATGAACTTGTGCAGCAGCAAATGGAGAATCTGAGAAGGAAGGAAAGAATATTGGAAGATGAGAACATGAATTTATCCAACTGGGTGAGAATGTTTACTCCTACTACTAACGATCATAGGGCAATGATGGAAGAAAATAAAAGAGTGCAAGAACAAGTAATGGATCAGTTTCCATTTTTTGAGGATCAACCTTCTAGTAGTTTCCTTCAACTTGCTGCACCTGTCCTCAGTCCTTATCTTCAACTTGGTCAACCAAATGTTCAAGATTATTTCAATGCTAGGGACCCTGATCAGCCATAG 741 0.3846 MGRGKIEIKRIENTTTRQVTFSKRRTGLLKKTNELSVLCDAEIGLIIFSSTGKLFQYCSQPYRMDQIIEKYKRSTGKRIMEEHDHQIQFHHREEMLHEMAMLRQESLRIEYGIQRYLGADVNCLKYDDLTKLEGELEISLTKIRNRQNELVQQQMENLRRKERILEDENMNLSNWVRMFTPTTNDHRAMMEENKRVQEQVMDQFPFFEDQPSSSFLQLAAPVLSPYLQLGQPNVQDYFNARDPDQP 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03980 246 Pfam K-box region 90 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi4g03980 246 Coils Coil 148 171 - -
Vivi4g03980 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi4g03980 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi4g03980 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi4g03980 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi4g03980 246 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Vivi4g03980 246 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi4g03980 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi4g03980 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi4g03980 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Vivi4g03980 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi4g03980 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vivi4g03980 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03980 Vivi-Chr4 160634546 160636189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03980 1 242 MADS-box Gene Family AT5G23260 44.403 1.42e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi4g03980 K-box 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03980 - - gmx:102667157 284.263