Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03972 ATGGGTGCAACAAATGTTATCAAATACAAAAGAAGCAAAGTTAGAAGAAAAAGTTTGGTCACTCGAAAATTGAGTAAACTTGATTTTGATGAGATGAATTGGACAAACATGATTCCGGAATGTCCTATATATCATCCATCTGAACAAGAATTTCAGAATCCTTTGGTTTATCTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCACCAGTTACTGCTTCTAATTCAGCCGATATTGTCATAACGAAAGAGAAAAAGGACTTCAAGTTTGAAACGATTGTGCAGCCTCTTCGTCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAAAGAGGAAGAAAATATACGTATCATGAATTCGAGGCGCTGGCAAACAAGGCGTTTTCGAATAGATTTGGCAGTTCGGGAGATCTTTCTTCGTCGAGTGTCGAAAAAGCGTTCTGGTACGAAATGATACATGGAGAGAAAGGAACTGTTGAGTATGGTGTTAACATTGAGGGTAGTGCCTTTTCATGTGATCCTGATGATAGGCTTGGAACAAGCAAATTCAATTTGAAGAAATTGGCGCGGCTACCGCAGTCACCGTTGCGTTTAGTTGACAAAGGAATTCCAGGAGTAACTGATCCAATGCTTTACATTGGGATGTTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGTATAAATTATCATCACTCTGGTGGAAACAAAACTTGGTATGGTGTTCCTAGTTATGCAGCCTTTGAATTTGAAAAGACTGTTTTGAACCATGTGTATTGCAACAAAGTGTTAACAGAACATGGAGAGAATGGTGCATTCCAATTTATATCGCATAAAACAACGATGTTCCCTCCGAATGTCTTGTTGCAAAACGATGTTCCGGTTTATAAGGCTCTGCAGAAGCCAGGAGAGTTTGTCGTCACCTTTCCTAAATCATATCATGCTGGATTTAGTCACGGTTTTAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTAGGGGCTGCGGCTAGCAAGCGTTACGCCCATCTCAAAATGCTACCGATAATTCCTTATGAAGAACTTCTTTGTAAAGAGGCAATGCTTATCTACAAGTCCTCAAAAGTCAGAAGGTCCAAGAAAAAACTTGAAGACATGCCGTCGTCCTATCGTGCTATTGTACTGTCTTTCTTGCAACTTATGCAATTTTACAGGACTTCGCTATCGCGGTTGAACAGTTCGAGAAATGTGTTGAGCTCTTCAAATACATTATTAGCCTCTCTGACATGCAGCATCTGCCATAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGAAATGCTATTCCTATCCAATTTGCCTTTTCCATGATGTTTTGCCACAAACTTGCTTATGTGGGAGAAAATATACTGTTTTTAAGAGGAATGACATGTTGGAATTGGAACATGCTGCCAAAAGTTTTCAACAGAAAAAAGAATGCATCGACGCGTTATCTTTAGCAAGTATATTCTCCTACAATGACATATATGAATTCACCAAAGATCTCAAGAATAATAACTGGCATGAAGAAAAGAGGGCTACAAGAGGTATTAACTCTCTAGGGGCAGTATCGAAACGGAAAAGACGAGTTGCGGATAACATTAATTCGTCGTAG 1680 0.3869 MGATNVIKYKRSKVRRKSLVTRKLSKLDFDEMNWTNMIPECPIYHPSEQEFQNPLVYLQKIAPEASKYGICKIVSPVTASNSADIVITKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGRKYTYHEFEALANKAFSNRFGSSGDLSSSSVEKAFWYEMIHGEKGTVEYGVNIEGSAFSCDPDDRLGTSKFNLKKLARLPQSPLRLVDKGIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGGNKTWYGVPSYAAFEFEKTVLNHVYCNKVLTEHGENGAFQFISHKTTMFPPNVLLQNDVPVYKALQKPGEFVVTFPKSYHAGFSHGFNCGEAVNFAIGDWFPLGAAASKRYAHLKMLPIIPYEELLCKEAMLIYKSSKVRRSKKKLEDMPSSYRAIVLSFLQLMQFYRTSLSRLNSSRNVLSSSNTLLASLTCSICHRDCYVAYLLCKKCYSYPICLFHDVLPQTCLCGRKYTVFKRNDMLELEHAAKSFQQKKECIDALSLASIFSYNDIYEFTKDLKNNNWHEEKRATRGINSLGAVSKRKRRVADNINSS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03972 559 SUPERFAMILY Clavaminate synthase-like 192 377 - -
Vivi4g03972 559 ProSiteProfiles JmjN domain profile. 41 82 IPR003349 -
Vivi4g03972 559 Pfam jmjN domain 42 74 IPR003349 -
Vivi4g03972 559 PANTHER LYSINE-SPECIFIC DEMETHYLASE 34 503 - -
Vivi4g03972 559 ProSiteProfiles JmjC domain profile. 188 358 IPR003347 -
Vivi4g03972 559 Gene3D Cupin 41 403 - -
Vivi4g03972 559 SMART cupin_9 188 358 IPR003347 -
Vivi4g03972 559 Pfam JmjC domain, hydroxylase 218 341 IPR003347 -
Vivi4g03972 559 SMART JmjN_1 40 81 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03972 Vivi-Chr4 160595370 160598258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03972 38 505 JUMONJI Transcription Factor Family AT2G34880 28.674 6.15e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi4g03972 JmjC 6.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03972 - - cam:101502558 903.664