Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi4g03967 | ATGTATGTACAGGCTGCTCAACTCACTTATTTTGTTGGATCTCATGTTTGGGTTGAGGACCCTGATGAAGCTTGGCTAGATGGAGAAATCCTCGAATCTAAAGATAATGAGATCACCATTAGCTTTGAATCGGGAACAAAGGTTGTTAGCAAATCAGCTAATATTTACCCGAAAGATCCTGAGTTTCCACCTAACGGTGTGGAAGATATGACAAGACTTGCATATCTGCATGAACCGGGAGTACTTCAAAATTTGCAAATTCGTTATACCCTCAATGATATATATACATACACAGGAAACATATTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTGTATGCAACTAGTACAATGGCAAAGTATAAAGGCGCGGCTTTTGGTGAGCAGAGTCCACATCCTTTTGCAATTGCAGGTTATGCATATAGGAAGATGATAAATGAAGAAAAAAGCCAAGCAATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACAGAAAGTACAAAGATGCTTATGCATTATCTTGCCTATTTGGGAGGGAGAGCAGCAACCGAGGGACGGTCTGTGGAGCAACAAGTTCTTGAGTCCAATCCTGTTTTAGAAGCATTTGGGAATGCAAAGACAGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACTTATTTGCTAGAACGATCACGTGTTTGTCAAGTTTCTGATCCCGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCAAAAGAGGATGTTGAACGGTTCAAAGTGGGAAATCCAAGAACCTTTCATTATCTTAATCAATCAAATTGCTATGAACTGGATACATTGGATGACTCAAAGGAGTACCTTGATACTAGGAGAGCCATGGAAGTTGTTGGAATTAGCGCTGATGAAACAGATGCTATATTTCGAATAGTAGCTGCTGTACTTCATTTAGGAAACATTGAATTTGTTAAGGCAATGGATGAAGGGATGGATTCCTCTAAGCCTAAAGATGAAAAATCTTATTTCCACCTAAAAACCGCAGCAGAGCTTTTGATGTGCGATGAAAAGTCCCTTGAAGACTCTTTTTGCAAACGCCTTATGGTGACTCGTGGTGAGGCTATAACAAAGTGCCTTGATCCAAATTCTGCAGCTCTCAGTCGAGATGCATTGGCTAAAATTGTTTATTCAAGGCTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGACAAGATCCAACTTCGAAGAACTTAATTGGAGTTCTAGATATATACGGATTCGAGAGTTTCAAGACAAACAGCTTCGAGCAATTTTGTATCAATTTGACAAATGAGAAGTTACAGCAACATTTCAACCAGCATGTTTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAAATTGATTGGAGTTATATAGAGTTCGTCGATAATCAAGACGTTCTTGATCTTATTGAGAAGAAACCCGGCGGTGTTATTGCTCTTCTAGATGAGGCTTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATATCAAACACTTAAGGACAATAAGCGATTCAGCAAACCAAAGTTGTCGCGAACTGACTTCACCATCAATCACTATGCTGGTGATGTCACTTATCAAACTGATCTTTTCCTTGATAAAAACAAAGACTATGTTGTTCCGGAACACGCTGCGCTGCTCTGTGCTTCCAAGTGCTCCTTTGTTTCAGGACTTTTCCCGCCTTTACACGAGGAAACTACTAAATCAACAAAGTTTTCTTCTATAGCCACTCAGTTTAAGCAACAACTGCAATCTTTGCTTGAAACGTTGAACGCGACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAGCCAGGGATATTTGAGAACAACGATGTGTTACAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTAGGATTAGTTGTGCTGGATATCCAACTAGAAAGAACTTCGATGAATTTGTTCAGCGGTTTAGTATTTTGGAACCTAAGGTTCTAAAATCGTGCCCTGATGAGATGACTGCGTGCAAGAGGCTTCTAGACAAAGCAAACCTTCAAGATTATCAAATAGGAAAGACAAAAGTTTTTCTGAGAGCGGGTCAAATGGCAGAACTAGATGCATGTCGTGCGGAGGTCCTAGGAAGATCCGCAATCGTTATTCAGAAAAAAGGTCGCACATATATTTGTCAAAAACAGTACAATTTATTGCGATTCTCTGCCATAGAACTACAAAGGGCTATTAAAGGACAACTTGCAAGACGTCGGTATGAATGCTTGAGAAGGGATGCCGCATCTTTGATAATTCAGAAACAAATCCGCATGTATCTTTCGAGAAGTGCTTATAAAACTAAATATTCCAAAGCTGTATGTATTCAAACTGGCATGCGAGGAATGGCTGCTAGAAATGAACTTCGATTCAGGAAGCGGACACACGCTGCAACTGTTATTCAGGGTTACTACAGATGTTATTTAGCTCATACTTATTTCAAAAGGCTAAAGAAAGCAACAATTGCAGTGCAGTGCTCCTGGAGGAGAACAAGAGCACGAAGAGAACTTCGAAAGCTTAAAATGGCGGCTAAGGAATCCAAGGCCCTAGAAGCCGCGAAACTTAATCTAGAAAAGCAAGTTGAGGAACTATCAGAGATTCTAGAGACGGAGAAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAATGTGCTTTGGAAGAGATGGAGATTCGGTTCAAAGAAACTAAAGCGGAGCTCACTCAGGAACTCGAGGCTGCAAAGAAAGTAGCTGAGCAAACTCCTACTATTCTGGAAAATAATGCTGCTGATAATGAATTGATCAATAAGCTTACTGCGGAAAATGAAGAACTCAAGGAGCTTGTTAACTCATTGGAAAAGAAAACTAAACACGAGCTTTCTGATAATGTTACCGACAATGAACTCGTGAATAAGCTTACTACAGAAAATGAACAACTCAAGGAGCTAGTTAATTCATTGGAAAAGAAAACTAAACAGCAGATTCCTGCTAATTTTACAGAAAATGAAGTGATTAATAAGCTTACTACAGAAAATGAACAACTCCAGGAGCTAGTTAATTCATTGGAAAAGAAAACTAAACAGGAGATTCCTTCTAATTTTACTGAAAATGAAGTGATTAATAAGCTTACTACAGAAAATGAACAGCTCAAAGAGCTGGTTAGTTCATTGGAAAAGAAAACTAAAGAGGAGTTTCCTGCTAGTTTTACCGACAATGAAGTGATTAATAAGCTTAGAGAAGAAAAGGAACATTTCAAGGACCAAGTTAGTTCATTGGAAAAGAAAATTGATGAGACAGAAAAGAGATATGAAGAAAGTAGCACGATTAGTCAGGAGCGGATGAATCAAATTATAGAAACAGAATCAAAGATGATTGAGCTAAAGACGAATATGCAAAGGCTTGAAGAAAAACTTTCTGATATGGAAACCGAGAATCAAATTTTCCGGAAGCAAGCGCTGTTGACCTCATCGTCCAAGAGAATTACACCTGCAACAATTCCGCCTTTGGAAAACGGTCATCCGATTGCAGTAAAAACACTTGGTTCAGAAGCTGTGAGGAGATCTCATATGGAGAGACATCAAGAGAGTATAGATGCTCTTTTCAAGTGTGTGATAAAAGATCTCGGGTTCTCTGAAGGGAAACCTGTTGCGGCATTTACCCTTTATAATTGTTTGCTACATTGGAAATCTTTTGAAGCAGATAAGACAAGTATATTTGATCGTCTTATTCAGCTGATCGGTTCTGCAATAGAGGATCAGGATAATAACAATTGTATGGCGTATTGGCTGTCCAATACATCTGCTTTGTTTTTTCACCTTCAACGATGTTTAAGAGCGCCAGCACGAAAACCACCCACTCCAACAGGGTTTTTTGGGAGGATGACTCAGGGTTTCCGCTCATCAAATAGTCTTTCGAGTAGTTCGTTTGATGTAGAACATCAAGTTGAAGCAAAGTATCCAGCTTTGCTTTTCAAGCAACAGCTTGCAGCTTATGTGGAAAAGATATACGGAATCGTTCGAGAAAATATGAAGAAAGAATTGTCCCCTCTACTTTCTACTTGCATAGAGGAGCACAGAACACGAAACGACAACAGCCAACCAGCCGGTTCATGGCTCAACATTATTGAATGCCTTAATAAATTTCTCAAGATTCTAAAAGAAAATTATGTGCCTCCCATTCTAGTTCAAAAGGTATTTAATCAGACTTTTCAATATATCAACGCAGAGATATTTAACAGCCTTCTATTGCATAAAGAATGCTGCACATTCAACAATGGGGAGTATATAAAATCAGGGTTAGCTGAACTAGAATTATGGTGTATTGAAGTAACGGAAGAGTATGCTGGCTCGTCTTTGGATGAACTCAACCATTCAAAACAAGCAGTTAGATTCTTGGTTGCTCAAGAGAAGGATGAAATATCCTATGACGATCTTACAAACGACATCTGCCCGGTCTTGAGTTCTCAACAGCTTTATAGACTATGTACACTATCCTCGGATGAAAATGAAAACGAGAACACCAAAAGTGTATCAACAGATGTAACTACTAGATTAAAGCTGCTAATGACAGATGATGATGTAGGTGATGATGACAAATCCTTCTTGTTGGAAGACAATTCAAGTCTTCCTATTATTGTTGAAGAGGTTTCTCATTCGCAAAAAGACAAGACAATTCCAAAAGTAACTCCTCCTGCAGAACTACTCGAGAGTGCAGCATTCCAATTTTTACATGATTATAGTTAA | 4857 | 0.3887 | MYVQAAQLTYFVGSHVWVEDPDEAWLDGEILESKDNEITISFESGTKVVSKSANIYPKDPEFPPNGVEDMTRLAYLHEPGVLQNLQIRYTLNDIYTYTGNILIAVNPFQRLPHLYATSTMAKYKGAAFGEQSPHPFAIAGYAYRKMINEEKSQAILVSGESGAGKTESTKMLMHYLAYLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEDVERFKVGNPRTFHYLNQSNCYELDTLDDSKEYLDTRRAMEVVGISADETDAIFRIVAAVLHLGNIEFVKAMDEGMDSSKPKDEKSYFHLKTAAELLMCDEKSLEDSFCKRLMVTRGEAITKCLDPNSAALSRDALAKIVYSRLFDWIVDKINNSIGQDPTSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTLKDNKRFSKPKLSRTDFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLCASKCSFVSGLFPPLHEETTKSTKFSSIATQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNDVLQQLRCGGVMEAIRISCAGYPTRKNFDEFVQRFSILEPKVLKSCPDEMTACKRLLDKANLQDYQIGKTKVFLRAGQMAELDACRAEVLGRSAIVIQKKGRTYICQKQYNLLRFSAIELQRAIKGQLARRRYECLRRDAASLIIQKQIRMYLSRSAYKTKYSKAVCIQTGMRGMAARNELRFRKRTHAATVIQGYYRCYLAHTYFKRLKKATIAVQCSWRRTRARRELRKLKMAAKESKALEAAKLNLEKQVEELSEILETEKRMREAKTQENEKLQCALEEMEIRFKETKAELTQELEAAKKVAEQTPTILENNAADNELINKLTAENEELKELVNSLEKKTKHELSDNVTDNELVNKLTTENEQLKELVNSLEKKTKQQIPANFTENEVINKLTTENEQLQELVNSLEKKTKQEIPSNFTENEVINKLTTENEQLKELVSSLEKKTKEEFPASFTDNEVINKLREEKEHFKDQVSSLEKKIDETEKRYEESSTISQERMNQIIETESKMIELKTNMQRLEEKLSDMETENQIFRKQALLTSSSKRITPATIPPLENGHPIAVKTLGSEAVRRSHMERHQESIDALFKCVIKDLGFSEGKPVAAFTLYNCLLHWKSFEADKTSIFDRLIQLIGSAIEDQDNNNCMAYWLSNTSALFFHLQRCLRAPARKPPTPTGFFGRMTQGFRSSNSLSSSSFDVEHQVEAKYPALLFKQQLAAYVEKIYGIVRENMKKELSPLLSTCIEEHRTRNDNSQPAGSWLNIIECLNKFLKILKENYVPPILVQKVFNQTFQYINAEIFNSLLLHKECCTFNNGEYIKSGLAELELWCIEVTEEYAGSSLDELNHSKQAVRFLVAQEKDEISYDDLTNDICPVLSSQQLYRLCTLSSDENENENTKSVSTDVTTRLKLLMTDDDVGDDDKSFLLEDNSSLPIIVEEVSHSQKDKTIPKVTPPAELLESAAFQFLHDYS | 1618 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi4g03967 | 1618 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 315 | 606 | - | - | |
| Vivi4g03967 | 1618 | Coils | Coil | 966 | 996 | - | - | |
| Vivi4g03967 | 1618 | Gene3D | - | 838 | 887 | - | - | |
| Vivi4g03967 | 1618 | Gene3D | - | 740 | 789 | - | - | |
| Vivi4g03967 | 1618 | Gene3D | - | 790 | 837 | - | - | |
| Vivi4g03967 | 1618 | SMART | DIL_2 | 1435 | 1542 | IPR002710 | - | |
| Vivi4g03967 | 1618 | FunFam | Class V myosin | 444 | 580 | - | - | |
| Vivi4g03967 | 1618 | Gene3D | Kinesin motor domain | 68 | 667 | IPR036961 | - | |
| Vivi4g03967 | 1618 | Coils | Coil | 1113 | 1147 | - | - | |
| Vivi4g03967 | 1618 | Pfam | Myosin head (motor domain) | 67 | 725 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | CDD | MYSc_Myo11 | 79 | 725 | IPR036018 | - | |
| Vivi4g03967 | 1618 | CDD | MyosinXI_CBD | 1229 | 1585 | IPR037975 | GO:0007015 | |
| Vivi4g03967 | 1618 | ProSiteProfiles | IQ motif profile. | 763 | 792 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | FunFam | Myosin 2 | 315 | 435 | - | - | |
| Vivi4g03967 | 1618 | Gene3D | - | 672 | 735 | - | - | |
| Vivi4g03967 | 1618 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 11 | 60 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | FunFam | unconventional myosin-Va | 839 | 886 | - | - | |
| Vivi4g03967 | 1618 | PRINTS | Myosin heavy chain signature | 487 | 515 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | PRINTS | Myosin heavy chain signature | 152 | 177 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | PRINTS | Myosin heavy chain signature | 434 | 462 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | PRINTS | Myosin heavy chain signature | 199 | 226 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | PRINTS | Myosin heavy chain signature | 95 | 114 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | FunFam | Myosin heavy chain | 255 | 310 | - | - | |
| Vivi4g03967 | 1618 | Pfam | IQ calmodulin-binding motif | 791 | 809 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | Pfam | IQ calmodulin-binding motif | 837 | 857 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | Pfam | IQ calmodulin-binding motif | 766 | 783 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | Coils | Coil | 1043 | 1066 | - | - | |
| Vivi4g03967 | 1618 | Coils | Coil | 1008 | 1031 | - | - | |
| Vivi4g03967 | 1618 | SMART | MYSc_2a | 59 | 738 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | Coils | Coil | 872 | 951 | - | - | |
| Vivi4g03967 | 1618 | Pfam | Myosin N-terminal SH3-like domain | 13 | 53 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vivi4g03967 | 1618 | Pfam | DIL domain | 1436 | 1534 | IPR002710 | - | |
| Vivi4g03967 | 1618 | Gene3D | - | 255 | 313 | - | - | |
| Vivi4g03967 | 1618 | SMART | iq_5 | 810 | 832 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | SMART | iq_5 | 739 | 761 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | SMART | iq_5 | 835 | 857 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | SMART | iq_5 | 858 | 880 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | SMART | iq_5 | 762 | 784 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | SMART | iq_5 | 787 | 809 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | Gene3D | - | 444 | 628 | - | - | |
| Vivi4g03967 | 1618 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 791 | 887 | IPR027417 | - | |
| Vivi4g03967 | 1618 | Coils | Coil | 1078 | 1101 | - | - | |
| Vivi4g03967 | 1618 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 39 | 790 | IPR027417 | - | |
| Vivi4g03967 | 1618 | ProSiteProfiles | Dilute domain profile. | 1278 | 1562 | IPR002710 | - | |
| Vivi4g03967 | 1618 | ProSiteProfiles | IQ motif profile. | 811 | 840 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | ProSiteProfiles | IQ motif profile. | 836 | 865 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | ProSiteProfiles | IQ motif profile. | 859 | 888 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | FunFam | unconventional myosin-Va | 790 | 838 | - | - | |
| Vivi4g03967 | 1618 | PANTHER | MYOSIN | 825 | 1539 | - | - | |
| Vivi4g03967 | 1618 | Coils | Coil | 1155 | 1189 | - | - | |
| Vivi4g03967 | 1618 | ProSiteProfiles | IQ motif profile. | 788 | 814 | IPR000048 | GO:0005515 | |
| Vivi4g03967 | 1618 | ProSiteProfiles | Myosin motor domain profile. | 65 | 737 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi4g03967 | Vivi-Chr4 | 160489496 | 160499620 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi4g03967 | 1400 | 1616 | Myosins gene family | AT1G04600 | 48.848 | 3.74e-56 | 214 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi4g03967 | K10357 | - | gmx:100788123 | 2404.79 |