Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03939 ATGGCCAATGAATCTGAACCCAAAGTTTGTGATAATGCCATTCCACCACAAAAAATTGAAATCAAGAGGGAGTTTGAGGATGTAGATCAGAATGAAGTGATTGCGAAGAAGCAGAAAATAGACGAGGTGGTTGTAAAACAAGAGGTTAAGGAGGAAAATAATTCAGATTATTCTGAACATGACAAGAAACTTGAAGCTAAAAATGAATCTGATACTGGCTGCGGATCTTTGAAATCATCGGATGATGGTGTCTCAGATCATGACTCTCATGGAATCTCTGACGAGGATAATCCTGAAGATTTGGAGAGTCCTGAGTACAATGAGGAAGAAATAGAGGGAAAAGTCTCCAAAACACCTCAGGAAAAGCACGAAACTCCAGTCAGTCTAAATGAAAAGTATGCTGCACCGAAGACAGTAATTGTTAGAAACTTGTCATATAGTGTGGAGCGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAATTGTTGATGTTCGATTCAACACAGATCGTGAAGGGAGGTTTAAAGGCTATGGATATGTCGAGTTTGGAACTGCAGAAGCAGCAGAAAAAGCCCTGGATTTGAATAATTTAATGCTATTGAATCGCCGCATCAAAGTTGACATAGCTCTAGAAAAGGGTGAATATCCCCCACATAGAAGCTCATTCCATACGGGTGGAGATCTTCAGTCTCACACTGCTAAGGGTTTTGATGCATCTCTTGTAGAAAACCAGCCTAAAAGCCCAGCTCCAAATGAAACAAATGGTGCATCGAAGACCATATATGTCAGAAACTTGTCATACAGTGTGGAGCGAGCTGATATGGAAGAAGTTTTCAAAGATTGTGGAGAAATTGTCGATGTTCGTCTCCATACAGACCGCGACGGGAATTTTAAAGGCTATGGACATGTTCAGTTTGCAACAGCTGAAGCAGCTCAAAAGGCTCTTGCGTTCAACAAGAAAGTGTTTTTTAACCGTCTCATGTTTGTCGGTTTAGCTATGGAAAGGGGTAAATATGCCCCCAATGGAAGCAGCTCCTGGAGCAGCTTATTGCATAAGGATGAAAGATTACAGTCTCAAACTGTACCTGTGAAGTGTTCTACTACATCTCTTGTGGAAGGCAAGTTGAATTGTACAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGTTGAGAATAAAGTTCCAGAAACCCCAGCTACACAAAAAGAGGAAAATGCTGCATCAAAAACAGTATGTGTTAGAAACGTGTCATTCGATGTGGAACGAGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGATGTTGTTGATGTCCGTCTCCATGTGGATGTTGAGTTTGCAACCGCAGAAGAAGCAGAAAAGGCTCTTGAGTTGGATTACACAAGATTGACTAACCATCCCGTCAAAGTTGGTATGGCTCCAGCAGAGGGTGAATGTTTCCCCAATAAAAGCAGCGTGAGCATCCCATTCTCGAAGTGCGAAACTTTTCAGCCTCTAACTGTATTTGTGATTGGATTTGATACATCCCCTGCCGAAGAGAAGATAAAAGCCACCTTGAAGAATCATTTCAGTTCTTGTGGAGAGATTACAAGAATCTCATTACCGAGACATCATGATTCTTGTAACATTAAGGGTTATGCTCATTTGGACTTCAAGGATATTGATGGCTATAAGAAGGCACTACAGCTTGATCAAACTGCGATTGGCGATTTTTGGTTGTCGGTTGAAAAAGCAAAGCCAAAACAGAGACGCGATTATCAGGGTATAGGTGGTAGCAGAGACAGCTATCACGGCGGTGGTGGAAGGGATGGAGGAGACTATGGAGGTGGAGCGGGTTGGGGGAGAAGTCATGGTGCTGGGAGGCACTATTAG 1884 0.4204 MANESEPKVCDNAIPPQKIEIKREFEDVDQNEVIAKKQKIDEVVVKQEVKEENNSDYSEHDKKLEAKNESDTGCGSLKSSDDGVSDHDSHGISDEDNPEDLESPEYNEEEIEGKVSKTPQEKHETPVSLNEKYAAPKTVIVRNLSYSVERADMEDIFKDCGEIVDVRFNTDREGRFKGYGYVEFGTAEAAEKALDLNNLMLLNRRIKVDIALEKGEYPPHRSSFHTGGDLQSHTAKGFDASLVENQPKSPAPNETNGASKTIYVRNLSYSVERADMEEVFKDCGEIVDVRLHTDRDGNFKGYGHVQFATAEAAQKALAFNKKVFFNRLMFVGLAMERGKYAPNGSSSWSSLLHKDERLQSQTVPVKCSTTSLVEGKLNCTKEVKDVEMFDAASVENKVPETPATQKEENAASKTVCVRNVSFDVERAEIENIFKDCGDVVDVRLHVDVEFATAEEAEKALELDYTRLTNHPVKVGMAPAEGECFPNKSSVSIPFSKCETFQPLTVFVIGFDTSPAEEKIKATLKNHFSSCGEITRISLPRHHDSCNIKGYAHLDFKDIDGYKKALQLDQTAIGDFWLSVEKAKPKQRRDYQGIGGSRDSYHGGGGRDGGDYGGGAGWGRSHGAGRHY 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03939 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Vivi4g03939 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 213 IPR000504 GO:0003723
Vivi4g03939 627 MobiDBLite consensus disorder prediction 81 97 - -
Vivi4g03939 627 MobiDBLite consensus disorder prediction 37 127 - -
Vivi4g03939 627 SUPERFAMILY RNA-binding domain, RBD 521 615 IPR035979 GO:0003676
Vivi4g03939 627 Gene3D - 498 622 IPR012677 -
Vivi4g03939 627 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 247 330 - -
Vivi4g03939 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 207 IPR000504 GO:0003723
Vivi4g03939 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 327 IPR000504 GO:0003723
Vivi4g03939 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 472 IPR000504 GO:0003723
Vivi4g03939 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 521 574 IPR000504 GO:0003723
Vivi4g03939 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 584 IPR000504 GO:0003723
Vivi4g03939 627 SUPERFAMILY RNA-binding domain, RBD 247 347 IPR035979 GO:0003676
Vivi4g03939 627 Gene3D - 229 343 IPR012677 -
Vivi4g03939 627 Gene3D - 374 482 IPR012677 -
Vivi4g03939 627 Gene3D - 24 223 IPR012677 -
Vivi4g03939 627 SMART rrm1_1 504 580 IPR000504 GO:0003723
Vivi4g03939 627 SMART rrm1_1 138 209 IPR000504 GO:0003723
Vivi4g03939 627 SMART rrm1_1 261 332 IPR000504 GO:0003723
Vivi4g03939 627 SMART rrm1_1 414 475 IPR000504 GO:0003723
Vivi4g03939 627 MobiDBLite consensus disorder prediction 587 616 - -
Vivi4g03939 627 MobiDBLite consensus disorder prediction 37 69 - -
Vivi4g03939 627 SUPERFAMILY RNA-binding domain, RBD 130 228 IPR035979 GO:0003676
Vivi4g03939 627 SUPERFAMILY RNA-binding domain, RBD 403 480 IPR035979 GO:0003676
Vivi4g03939 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 479 IPR000504 GO:0003723
Vivi4g03939 627 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03939 Vivi-Chr4 160190259 160210953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03939 139 337 Eukaryotic Initiation Factors Gene Family AT4G34110 26.500 4.20e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03939 - - mtr:25482764 849.351