Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03938 ATGGCCAATGAATCTGAACCCAAAGTTTGTGATAATGCCATTCCACCACAAAAAATTGAAATCAAGAGGGAGTTTGAGGATGTAGATCAGAATGAAGTGATTGCGAAGAAGCAGAAAATAGACGAGGTGGTTGTAAAACAAGAGGTTAAGGAGGAAAATAATTCAGATTATTCTGAACATGACAAGAAACTTGAAGCTAAAAATGAATCTGATACTGGCTGCGGATCTTTGAAATCATCGGATGATGGTGTCTCAGATCATGACTCTCATGGAATCTCTGACGAGGATAATCCTGAAGATTTGGAGAGTCCTGAGTACAATGAGGAAGAAATAGAGGGAAAAGTCTCCAAAACACCTCAGGAAAAGCACGAAACTCCAGTCAGTCTAAATGAAAAGTATGCTGCACCGAAGACAGTAATTGTTAGAAACTTGTCATATAGTGTGGAGCGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAATTGTTGATGTTCGATTCAACACAGATCGTGAAGGGAGGTTTAAAGGCTATGGATATGTCGAGTTTGGAACTGCAGAAGCAGCAGAAAAAGCCCTGGATTTGAATAATTTAATGCTATTGAATCGCCGCATCAAAGTTGACATAGCTCTAGAAAAGGGTGAATATCCCCCACATAGAAGCTCATTCCATACGGGTGGAGATCTTCAGTCTCACACTGCTAAGGGTTTTGATGCATCTCTTGTAGAAAACCAGCCTAAAAGCCCAGCTCCAAATGAAACAAATGGTGCATCGAAGACCATATATGTCAGAAACTTGTCATACAGTGTGGAGCGAGCTGATATGGAAGAAGTTTTCAAAGATTGTGGAGAAATTGTCGATGTTCGTCTCCATACAGACCGCGACGGGAATTTTAAAGGCTATGGACATGTTCAGTTTGCAACAGCTGAAGCAGCTCAAAAGGCTCTTGCGTTCAACAAGAAAGTGTTTTTTAACCGTCTCATGTTTGTCGGTTTAGCTATGGAAAGGGGTAAATATGCCCCCAATGGAAGCAGCTCCTGGAGCAGCTTATTGCATAAGGATGAAAGATTACAGTCTCAAACTGTACCTGTGAAGTGTTCTACTACATCTCTTGTGGAAGGCAAGTTGAATTGTACAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGTTGAGAATAAAGTTCCAGAAACCCCAGCTACACAAAAAGAGGAAAATGCTGCATCAAAAACAGTATGTGTTAGAAACGTGTCATTCGATGTGGAACGAGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGATGTTGTTGATGTCCGTCTCCATGTGGATGTTGAGTTTGCAACCGCAGAAGAAGCAGAAAAGGCTCTTGAGTTGGATTACACAAGATTGACTAACCATCCCGTCAAAGTTGGTATGGCTCCAGCAGAGGGTGAATGTTTCCCCAATAAAAGCGTGAGCATCCCATTCTCGAAGTGCGAAACTTTTCAGCCTCTAACTGTATTTGTGATTGGATTTGATACATCCCCTGCCGAAGAGAAGATAAAAGCCACCTTGAAGAATCATTTCAGTTCTTGTGGAGAGATTACAAGAATCTCATTACCGAGACATCATGATTCTTGTAACATTAAGGGTTATGCTCATTTGGACTTCAAGGATATTGATGGCTATAAGAAGGCACTACAGCTTGATCAAACTGCGATTGGCGATTTTTGGTTGTCGGTTGAAAAAGCAAAGCCAAAACAGAGACGCGATTATCAGGGTATAGGTGGTAGCAGAGACAGCTATCACGGCGGTGGTGGAAGGGATGGAGGAGACTATGGAGGTGGAGCGGGTTGGGGGAGAAGTCATGGTGCTGGGAGGCACTATTAG 1881 0.42 MANESEPKVCDNAIPPQKIEIKREFEDVDQNEVIAKKQKIDEVVVKQEVKEENNSDYSEHDKKLEAKNESDTGCGSLKSSDDGVSDHDSHGISDEDNPEDLESPEYNEEEIEGKVSKTPQEKHETPVSLNEKYAAPKTVIVRNLSYSVERADMEDIFKDCGEIVDVRFNTDREGRFKGYGYVEFGTAEAAEKALDLNNLMLLNRRIKVDIALEKGEYPPHRSSFHTGGDLQSHTAKGFDASLVENQPKSPAPNETNGASKTIYVRNLSYSVERADMEEVFKDCGEIVDVRLHTDRDGNFKGYGHVQFATAEAAQKALAFNKKVFFNRLMFVGLAMERGKYAPNGSSSWSSLLHKDERLQSQTVPVKCSTTSLVEGKLNCTKEVKDVEMFDAASVENKVPETPATQKEENAASKTVCVRNVSFDVERAEIENIFKDCGDVVDVRLHVDVEFATAEEAEKALELDYTRLTNHPVKVGMAPAEGECFPNKSVSIPFSKCETFQPLTVFVIGFDTSPAEEKIKATLKNHFSSCGEITRISLPRHHDSCNIKGYAHLDFKDIDGYKKALQLDQTAIGDFWLSVEKAKPKQRRDYQGIGGSRDSYHGGGGRDGGDYGGGAGWGRSHGAGRHY 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03938 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Vivi4g03938 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 213 IPR000504 GO:0003723
Vivi4g03938 626 MobiDBLite consensus disorder prediction 81 97 - -
Vivi4g03938 626 MobiDBLite consensus disorder prediction 37 127 - -
Vivi4g03938 626 Gene3D - 497 621 IPR012677 -
Vivi4g03938 626 SUPERFAMILY RNA-binding domain, RBD 520 614 IPR035979 GO:0003676
Vivi4g03938 626 SUPERFAMILY RNA-binding domain, RBD 247 347 IPR035979 GO:0003676
Vivi4g03938 626 SUPERFAMILY RNA-binding domain, RBD 403 481 IPR035979 GO:0003676
Vivi4g03938 626 Gene3D - 229 343 IPR012677 -
Vivi4g03938 626 Gene3D - 374 482 IPR012677 -
Vivi4g03938 626 Gene3D - 24 223 IPR012677 -
Vivi4g03938 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 583 IPR000504 GO:0003723
Vivi4g03938 626 MobiDBLite consensus disorder prediction 37 69 - -
Vivi4g03938 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 207 IPR000504 GO:0003723
Vivi4g03938 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 573 IPR000504 GO:0003723
Vivi4g03938 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 327 IPR000504 GO:0003723
Vivi4g03938 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 472 IPR000504 GO:0003723
Vivi4g03938 626 SUPERFAMILY RNA-binding domain, RBD 130 228 IPR035979 GO:0003676
Vivi4g03938 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 479 IPR000504 GO:0003723
Vivi4g03938 626 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 247 331 - -
Vivi4g03938 626 SMART rrm1_1 138 209 IPR000504 GO:0003723
Vivi4g03938 626 SMART rrm1_1 503 579 IPR000504 GO:0003723
Vivi4g03938 626 SMART rrm1_1 261 332 IPR000504 GO:0003723
Vivi4g03938 626 SMART rrm1_1 414 475 IPR000504 GO:0003723
Vivi4g03938 626 MobiDBLite consensus disorder prediction 586 615 - -
Vivi4g03938 626 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03938 Vivi-Chr4 160190259 160210953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03938 138 378 Eukaryotic Initiation Factors Gene Family AT1G49760 25.410 3.27e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03938 - - mtr:25482764 853.973