Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03936 ATGTCTGGAGTTCCGTTTCCGTCGAACCTTCTACCGTCGCCCGGGAGTCCCGAATGGTTAAGCAAATCCGACAACGCGTGGCAACTAATGGCCGCGACGTTAGTCGGACTGCAAAGTGTTCCGGGACTAATAATTTTATACGGCGGCGCGGTGAAAAAGAAATGGGCAGTGAATTCAGCATTCATGTCACTATATGCATTTGCATGTGTGTTTTTCTGTTGGGTTATTTGGGGTTATAGGATGTCATTTGGTGAAAGGCTTTTACCATTTTGGGGTAAACCAGGAGTTGCACTTGATCAAAATTATCTTTTCAAACCAGCTTTTTTGGGAGCTTTTCCAGTTGCTACTATGGTTTACTTTCAGTGTGTTTTTGCTGCTATTACTTTGATTTTAATAGCTGGTGCTTTGCTTGGAAGAATGAACTTCTATGCTTGGATGTTGTTTGTTCCTTTATGGCTCACTTTTTCATATACTATTACTGCTTTTAGTATTTGGAGTCCTAATGGATTTCTCTCCAAATTGGGGATTATTGATTACTCTGGTGGTTATGTTATTCATTTGTCTTCCGGTGTCGCTGGTTTCACCGCCGCTTATTGGGTTGGACCGCGGCTAAACAAAGATAGGGAAAGGTTTCCACCAAACAATCTACTTCTTATGTTGGCTGGAGCAGGACTGTTATGGATGGGATGGACAGGTTTCAATGGAGGAGATCCTTACTCAGTTGGATTAGATGCTTCCTTGGCTGTCTTGAACACACATGCTTGCACTGCTACTAGCTTGCTTACTTGGGTTTTCCTTGATGTCATTTTCTTCAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATCACTGGTTTGGTTTGCATCACTCCAGCTGCAGGTGTTGTACAAGGTTGGGCCGCACTTATAATGGGACTATTCTCCGGCTCAATTCCATGGTTTACCATGATGGTAATCCACAAGAGATCAAAGCTACTTCAAAAAGTAGACGACACAATGGCAGTGTTACACACTCATGCAATTGCAGGAAGTCTTGGAGGAATTCTCACTGGTCTATTTGCTGAACCGAAACTAAACTTCTTGTTCTATGGTGTTTATAGCAAATACGTCGGTCTATTTTATGGAATACAAATGAACATAGCGAGCACTGGATTCAGACAAATCGGAATCCAATTCCTTGGAATTTTGTTTGTTGTCTTTGTAAATGTTATTAGCACAAGTTTGATATGTTTAGTGATTCGAATCTTCGTTCCTTTGAGAATGTCCGAAGAGGATATGGAGATTGGTGATGAAGCTGCTCATGGTGAAGAAGCTTATGCTATTTGGGGTCAAGGTGATAAACTTGAGAATTCGAGTTCGAAATATGGAAGTTCTTTGTATGAAGATGTTGAAGTTGCTGCAACGAAGAAGAATAAGCGCGGTAGCGGTAGCCAGATTGAGATGATGTGA 1452 0.418 MSGVPFPSNLLPSPGSPEWLSKSDNAWQLMAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVIWGYRMSFGERLLPFWGKPGVALDQNYLFKPAFLGAFPVATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTITAFSIWSPNGFLSKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWMGWTGFNGGDPYSVGLDASLAVLNTHACTATSLLTWVFLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGLFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNFLFYGVYSKYVGLFYGIQMNIASTGFRQIGIQFLGILFVVFVNVISTSLICLVIRIFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYEDVEVAATKKNKRGSGSQIEMM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03936 483 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005886
Vivi4g03936 483 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005886
Vivi4g03936 483 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005886
Vivi4g03936 483 SUPERFAMILY Ammonium transporter 19 422 - -
Vivi4g03936 483 NCBIfam ammonium transporter 24 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi4g03936 483 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vivi4g03936 483 PANTHER AMMONIUM TRANSPORTER MEP2 8 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi4g03936 483 Pfam Ammonium Transporter Family 26 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vivi4g03936 483 FunFam Ammonium transporter 9 443 - -
Vivi4g03936 483 Gene3D Ammonium transporter AmtB like domains 13 444 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03936 Vivi-Chr4 160178194 160180111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03936 114 467 Inorganic Solute Cotransporters AT2G38290 61.864 7.30e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03936 K03320 - gmx:100787856 830.476