Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03933 ATGTCAGAAACACACGTTGCTGATGATTCTGGAAAATTTCTCTCTCTGAGTTTAGGAAGCAGATCTTCATTCAAACCCTACTTCAAAAAGAAGGAATATGGATGTCGATTTTGCCACAGAAAATTTCCGAGTTTTCAAGCTTTGGGAGGACATCAGAACGCTCATAGGCGTGAAAAAGTGCTTTCAAGAATGGAAAATGATTTTCATCATTTGTATCCATACTATGTAGGGTCACCATTTTATCATGGAATTGGCAACCCATCATGGCCTCAATTTGCTAGGATGAATAATGCTGGTGGTTGGATTAATCCAAATCCAATGAATAATAATGTGGGATTTGGAAATTATTATGAAGTTAATAATCAGATGCAGGTTCCTGGTGCAGCTCTTAACAATGTCATAATGGAAAATAACAATCCTTATGTCCCAAATAATCACCAAATTTCATCCTCATTGCCTGATTTGTGCCTCAGACTTTAG 480 0.3708 MSETHVADDSGKFLSLSLGSRSSFKPYFKKKEYGCRFCHRKFPSFQALGGHQNAHRREKVLSRMENDFHHLYPYYVGSPFYHGIGNPSWPQFARMNNAGGWINPNPMNNNVGFGNYYEVNNQMQVPGAALNNVIMENNNPYVPNNHQISSSLPDLCLRL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03933 159 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Vivi4g03933 159 Gene3D Classic Zinc Finger 5 71 - -
Vivi4g03933 159 PANTHER ZINC FINGER PROTEIN 4-LIKE 4 64 - -
Vivi4g03933 159 SUPERFAMILY beta-beta-alpha zinc fingers 29 61 IPR036236 -
Vivi4g03933 159 Pfam C2H2-type zinc finger 33 58 - -
Vivi4g03933 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03933 Vivi-Chr4 160163392 160163871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03933 33 159 C2H2 Transcription Factor Family AT1G24625 32.704 8.05e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03933 - - psat:127095023 250.751